B9IGX2_POPTR (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0006s11210 T20203_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s11210.1 KH 144 218
POPTR_0006s11210.2 KH 100 175

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

61 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009701m Prunus persica ppa009701m N 0.973
Glyma09g40820.1 Glycine max Glyma09g40820.1 N 0.973
Cucsa.130740 Cucumis sativus Cucsa.130740 N 0.961
27955.m000377 Ricinus communis 27955.m000377 N 0.960
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.960
LjT28H07.110.nc Lotus japonicus LjT28H07.110.nc N 0.960
mgf005196m Mimulus guttatus mgf005196m N 0.947
cassava39581.m1 Manihot esculenta cassava39581.m1 N 0.947
MDP0000665847 Malus x domestica MDP0000665847 N 0.947
MDP0000186494 Malus x domestica MDP0000186494 N 0.947
Cucsa.177080 Cucumis sativus Cucsa.177080 N 0.934
PK23097.1 Cannabis sativa PK23097.1 N 0.933
cassava25198.valid.m1 Manihot esculenta cassava25198.valid.m1 N 0.933
Medtr7g080640 Medicago truncatula Medtr7g080640 N 0.921
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.921
GSVIVG00029865001 Vitis vinifera GSVIVG00029865001 N 0.920
MDP0000119110 Malus x domestica MDP0000119110 N 0.920
MDP0000501473 Malus x domestica MDP0000501473 N 0.920
Medtr8g005290 Medicago truncatula Medtr8g005290 N 0.920
Medtr8g005390 Medicago truncatula Medtr8g005390 N 0.920
Glyma16g34750.1 Glycine max Glyma16g34750.1 N 0.907
Medtr3g083820 Medicago truncatula Medtr3g083820 N 0.893
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.893
POPTR_0016s14760 Populus trichocarpa POPTR_0016s14760 N 0.882
AT3G08620 Arabidopsis thaliana AT3G08620-TAIR-G N 0.880
PK22673.1 Cannabis sativa PK22673.1 N 0.880
XM_002881558.1 Arabidopsis lyrata fgenesh2_kg.4__1930__AT2G38610.2 N 0.872
AT2G38610 Arabidopsis thaliana AT2G38610-TAIR-G N 0.872
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.867
XM_002882529.1 Arabidopsis lyrata fgenesh2_kg.3__864__AT3G08620.1 N 0.867
Glyma14g38730.1 Glycine max Glyma14g38730.1 N 0.853
Glyma11g31530.1 Glycine max Glyma11g31530.1 N 0.853
Glyma02g40440.1 Glycine max Glyma02g40440.1 N 0.853
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.816
B9INJ7_POPTR Populus trichocarpa POPTR_0019s15270 N 0.813
Glyma18g05680.1 Glycine max Glyma18g05680.1 N 0.807
SB02G006770 Sorghum bicolor Sb02g006770 N 0.803
SB01G003680 Sorghum bicolor Sb01g003680 N 0.803
LOC_Os03g60110 Oryza sativa LOC_Os03g60110 N 0.800
GRMZM2G108677 Zea mays GRMZM2G108677 N 0.789
29945.m000086 Ricinus communis 29945.m000086 N 0.787
mgf011994m Mimulus guttatus mgf011994m N 0.776
GRMZM2G063643 Zea mays GRMZM2G063643 N 0.776
BGIOSIBCE013438 Oryza indica BGIOSIBCE013438 N 0.773
cassava38069.valid.m1 Manihot esculenta cassava38069.valid.m1 N 0.773
BRADI2G22090 Brachypodium distachyon BRADI2G22090 N 0.762
B9I777_POPTR Populus trichocarpa POPTR_0013s15580 N 0.760
GSVIVG00024534001 Vitis vinifera GSVIVG00024534001 N 0.737
BGIOSIBCE019437 Oryza indica BGIOSIBCE019437 N 0.729
SB03G038070 Sorghum bicolor Sb03g038070 N 0.729
LOC_Os05g40290 Oryza sativa LOC_Os05g40290 N 0.729
GRMZM2G122569 Zea mays GRMZM2G122569 N 0.726
Medtr5g083520 Medicago truncatula Medtr5g083520 N 0.723
AC218972.3_FG007 Zea mays AC218972.3_FG007 N 0.718
GRMZM2G085582 Zea mays GRMZM2G085582 N 0.718
GRMZM2G093006 Zea mays GRMZM2G093006 N 0.718
BRADI1G53760 Brachypodium distachyon BRADI1G53760 N 0.718
SB09G023640 Sorghum bicolor Sb09g023640 N 0.714
BGIOSIBCE024206 Oryza indica BGIOSIBCE024206 N 0.706
LjSGA_139736.1.1 Lotus japonicus LjSGA_139736.1.1 N 0.702