B9I777_POPTR (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0013s15580 T20224_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s15580.1 KH 145 207

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29945.m000086 Ricinus communis 29945.m000086 N 0.923
B9INJ7_POPTR Populus trichocarpa POPTR_0019s15270 N 0.886
cassava38069.valid.m1 Manihot esculenta cassava38069.valid.m1 N 0.868
Glyma16g34750.1 Glycine max Glyma16g34750.1 N 0.833
mgf011994m Mimulus guttatus mgf011994m N 0.814
PK23097.1 Cannabis sativa PK23097.1 N 0.806
MDP0000119110 Malus x domestica MDP0000119110 N 0.806
MDP0000501473 Malus x domestica MDP0000501473 N 0.806
GSVIVG00029865001 Vitis vinifera GSVIVG00029865001 N 0.803
GSVIVG00024534001 Vitis vinifera GSVIVG00024534001 N 0.800
PK22673.1 Cannabis sativa PK22673.1 N 0.797
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.795
MDP0000186494 Malus x domestica MDP0000186494 N 0.795
MDP0000665847 Malus x domestica MDP0000665847 N 0.795
Medtr8g005290 Medicago truncatula Medtr8g005290 N 0.792
cassava39581.m1 Manihot esculenta cassava39581.m1 N 0.792
Medtr8g005390 Medicago truncatula Medtr8g005390 N 0.792
cassava25198.valid.m1 Manihot esculenta cassava25198.valid.m1 N 0.789
AT3G08620 Arabidopsis thaliana AT3G08620-TAIR-G N 0.784
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.775
LOC_Os03g60110 Oryza sativa LOC_Os03g60110 N 0.775
SB02G006770 Sorghum bicolor Sb02g006770 N 0.775
LjT28H07.110.nc Lotus japonicus LjT28H07.110.nc N 0.773
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.773
Glyma09g40820.1 Glycine max Glyma09g40820.1 N 0.773
ppa009701m Prunus persica ppa009701m N 0.773
27955.m000377 Ricinus communis 27955.m000377 N 0.770
Cucsa.177080 Cucumis sativus Cucsa.177080 N 0.770
Medtr7g080640 Medicago truncatula Medtr7g080640 N 0.763
Cucsa.130740 Cucumis sativus Cucsa.130740 N 0.760
B9IGX2_POPTR Populus trichocarpa POPTR_0006s11210 N 0.760
Medtr3g083820 Medicago truncatula Medtr3g083820 N 0.757
SB01G003680 Sorghum bicolor Sb01g003680 N 0.753
BGIOSIBCE013438 Oryza indica BGIOSIBCE013438 N 0.746
AT2G38610 Arabidopsis thaliana AT2G38610-TAIR-G N 0.744
XM_002881558.1 Arabidopsis lyrata fgenesh2_kg.4__1930__AT2G38610.2 N 0.744
XM_002882529.1 Arabidopsis lyrata fgenesh2_kg.3__864__AT3G08620.1 N 0.743
GRMZM2G108677 Zea mays GRMZM2G108677 N 0.740
mgf005196m Mimulus guttatus mgf005196m N 0.733
Medtr5g083520 Medicago truncatula Medtr5g083520 N 0.730
Glyma11g31530.1 Glycine max Glyma11g31530.1 N 0.730
LjSGA_139736.1.1 Lotus japonicus LjSGA_139736.1.1 N 0.730
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.724
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.723
GRMZM2G063643 Zea mays GRMZM2G063643 N 0.722
Glyma02g40440.1 Glycine max Glyma02g40440.1 N 0.716
Glyma14g38730.1 Glycine max Glyma14g38730.1 N 0.716