Cucsa.177080 (Cucumis sativus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 Cucsa.177080 T20711_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.177080.1 KH 145 218
Cucsa.177080.2 KH 145 218
Cucsa.177080.3 KH 96 171
Cucsa.177080.4 KH 81 156

Links

Other KH family RBPs
Other Cucumis sativus RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9IGX2_POPTR Populus trichocarpa POPTR_0006s11210 N 0.934
ppa009701m Prunus persica ppa009701m N 0.921
Cucsa.130740 Cucumis sativus Cucsa.130740 N 0.921
Glyma09g40820.1 Glycine max Glyma09g40820.1 N 0.921
MDP0000186494 Malus x domestica MDP0000186494 N 0.919
MDP0000665847 Malus x domestica MDP0000665847 N 0.919
LjT28H07.110.nc Lotus japonicus LjT28H07.110.nc N 0.908
Medtr7g080640 Medicago truncatula Medtr7g080640 N 0.908
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.908
PK23097.1 Cannabis sativa PK23097.1 N 0.905
GSVIVG00029865001 Vitis vinifera GSVIVG00029865001 N 0.905
27955.m000377 Ricinus communis 27955.m000377 N 0.905
mgf005196m Mimulus guttatus mgf005196m N 0.895
Medtr8g005290 Medicago truncatula Medtr8g005290 N 0.892
Medtr8g005390 Medicago truncatula Medtr8g005390 N 0.892
cassava39581.m1 Manihot esculenta cassava39581.m1 N 0.892
cassava25198.valid.m1 Manihot esculenta cassava25198.valid.m1 N 0.892
MDP0000501473 Malus x domestica MDP0000501473 N 0.892
MDP0000119110 Malus x domestica MDP0000119110 N 0.892
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.882
Glyma16g34750.1 Glycine max Glyma16g34750.1 N 0.878
AT3G08620 Arabidopsis thaliana AT3G08620-TAIR-G N 0.867
PK22673.1 Cannabis sativa PK22673.1 N 0.855
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.851
AT2G38610 Arabidopsis thaliana AT2G38610-TAIR-G N 0.848
XM_002881558.1 Arabidopsis lyrata fgenesh2_kg.4__1930__AT2G38610.2 N 0.848
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.831
Glyma14g38730.1 Glycine max Glyma14g38730.1 N 0.829
Glyma02g40440.1 Glycine max Glyma02g40440.1 N 0.829
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.827
XM_002882529.1 Arabidopsis lyrata fgenesh2_kg.3__864__AT3G08620.1 N 0.827
B9INJ7_POPTR Populus trichocarpa POPTR_0019s15270 N 0.824
POPTR_0016s14760 Populus trichocarpa POPTR_0016s14760 N 0.824
Medtr3g083820 Medicago truncatula Medtr3g083820 N 0.816
SB02G006770 Sorghum bicolor Sb02g006770 N 0.813
Glyma11g31530.1 Glycine max Glyma11g31530.1 N 0.811
GRMZM2G063643 Zea mays GRMZM2G063643 N 0.787
SB01G003680 Sorghum bicolor Sb01g003680 N 0.787
LOC_Os03g60110 Oryza sativa LOC_Os03g60110 N 0.784
GRMZM2G108677 Zea mays GRMZM2G108677 N 0.773
B9I777_POPTR Populus trichocarpa POPTR_0013s15580 N 0.770
29945.m000086 Ricinus communis 29945.m000086 N 0.770
mgf011994m Mimulus guttatus mgf011994m N 0.760
cassava38069.valid.m1 Manihot esculenta cassava38069.valid.m1 N 0.757
BGIOSIBCE013438 Oryza indica BGIOSIBCE013438 N 0.757
Glyma18g05680.1 Glycine max Glyma18g05680.1 N 0.747
BRADI2G22090 Brachypodium distachyon BRADI2G22090 N 0.738
GRMZM2G122569 Zea mays GRMZM2G122569 N 0.726
SB09G023640 Sorghum bicolor Sb09g023640 N 0.726
BRADI1G53760 Brachypodium distachyon BRADI1G53760 N 0.726
GRMZM2G085582 Zea mays GRMZM2G085582 N 0.723
LOC_Os05g40290 Oryza sativa LOC_Os05g40290 N 0.718
BGIOSIBCE019437 Oryza indica BGIOSIBCE019437 N 0.718
LjSGA_139736.1.1 Lotus japonicus LjSGA_139736.1.1 N 0.711
Medtr5g083520 Medicago truncatula Medtr5g083520 N 0.707
GSVIVG00024534001 Vitis vinifera GSVIVG00024534001 N 0.707
SB03G038070 Sorghum bicolor Sb03g038070 N 0.706