Cucsa.130740 (Cucumis sativus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 Cucsa.130740 T20708_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.130740.1 KH 145 219
Cucsa.130740.2 KH 145 219
Cucsa.130740.3 KH 144 218
Cucsa.130740.4 KH 101 176

Links

Other KH family RBPs
Other Cucumis sativus RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma09g40820.1 Glycine max Glyma09g40820.1 N 0.987
ppa009701m Prunus persica ppa009701m N 0.987
LjT28H07.110.nc Lotus japonicus LjT28H07.110.nc N 0.973
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.973
B9IGX2_POPTR Populus trichocarpa POPTR_0006s11210 N 0.961
MDP0000186494 Malus x domestica MDP0000186494 N 0.960
MDP0000665847 Malus x domestica MDP0000665847 N 0.960
mgf005196m Mimulus guttatus mgf005196m N 0.960
PK23097.1 Cannabis sativa PK23097.1 N 0.947
Medtr7g080640 Medicago truncatula Medtr7g080640 N 0.934
Medtr8g005290 Medicago truncatula Medtr8g005290 N 0.933
Medtr8g005390 Medicago truncatula Medtr8g005390 N 0.933
cassava39581.m1 Manihot esculenta cassava39581.m1 N 0.933
MDP0000119110 Malus x domestica MDP0000119110 N 0.933
MDP0000501473 Malus x domestica MDP0000501473 N 0.933
Cucsa.177080 Cucumis sativus Cucsa.177080 N 0.921
27955.m000377 Ricinus communis 27955.m000377 N 0.920
Glyma16g34750.1 Glycine max Glyma16g34750.1 N 0.920
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.908
cassava25198.valid.m1 Manihot esculenta cassava25198.valid.m1 N 0.893
PK22673.1 Cannabis sativa PK22673.1 N 0.893
GSVIVG00029865001 Vitis vinifera GSVIVG00029865001 N 0.880
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.880
AT3G08620 Arabidopsis thaliana AT3G08620-TAIR-G N 0.867
Glyma02g40440.1 Glycine max Glyma02g40440.1 N 0.867
Glyma14g38730.1 Glycine max Glyma14g38730.1 N 0.867
XM_002881558.1 Arabidopsis lyrata fgenesh2_kg.4__1930__AT2G38610.2 N 0.859
AT2G38610 Arabidopsis thaliana AT2G38610-TAIR-G N 0.859
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.855
Medtr3g083820 Medicago truncatula Medtr3g083820 N 0.853
XM_002882529.1 Arabidopsis lyrata fgenesh2_kg.3__864__AT3G08620.1 N 0.853
POPTR_0016s14760 Populus trichocarpa POPTR_0016s14760 N 0.847
Glyma11g31530.1 Glycine max Glyma11g31530.1 N 0.840
B9INJ7_POPTR Populus trichocarpa POPTR_0019s15270 N 0.827
SB02G006770 Sorghum bicolor Sb02g006770 N 0.803
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.803
Glyma18g05680.1 Glycine max Glyma18g05680.1 N 0.795
mgf011994m Mimulus guttatus mgf011994m N 0.776
GRMZM2G063643 Zea mays GRMZM2G063643 N 0.776
SB01G003680 Sorghum bicolor Sb01g003680 N 0.763
29945.m000086 Ricinus communis 29945.m000086 N 0.760
LOC_Os03g60110 Oryza sativa LOC_Os03g60110 N 0.760
B9I777_POPTR Populus trichocarpa POPTR_0013s15580 N 0.760
BRADI2G22090 Brachypodium distachyon BRADI2G22090 N 0.750
GRMZM2G108677 Zea mays GRMZM2G108677 N 0.750
cassava38069.valid.m1 Manihot esculenta cassava38069.valid.m1 N 0.747
GRMZM2G122569 Zea mays GRMZM2G122569 N 0.738
BGIOSIBCE013438 Oryza indica BGIOSIBCE013438 N 0.733
GRMZM2G085582 Zea mays GRMZM2G085582 N 0.729
SB09G023640 Sorghum bicolor Sb09g023640 N 0.726
Medtr5g083520 Medicago truncatula Medtr5g083520 N 0.723
BGIOSIBCE019437 Oryza indica BGIOSIBCE019437 N 0.718
LOC_Os05g40290 Oryza sativa LOC_Os05g40290 N 0.718
SB03G038070 Sorghum bicolor Sb03g038070 N 0.718
GSVIVG00024534001 Vitis vinifera GSVIVG00024534001 N 0.711
GRMZM2G093006 Zea mays GRMZM2G093006 N 0.706
AC218972.3_FG007 Zea mays AC218972.3_FG007 N 0.706
LjSGA_139736.1.1 Lotus japonicus LjSGA_139736.1.1 N 0.702