CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRH2_BOVIN
(
Bos taurus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSBTAG00000007499
T34807_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.995
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000009864
RRM
13
84
VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSBTAP00000009864
RRM
113
182
VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSBTAP00000009864
RRM
291
358
VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE
Links
Other
RRM
family RBPs
Other
Bos taurus
RBPs
94 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os12g19620
Oryza sativa
LOC_Os12g19620
N
0.000
PGTG_01711
Puccinia graminis
PGTG_01711
N
0.000
PGTG_08804
Puccinia graminis
PGTG_08804
N
0.000
PGTG_09249
Puccinia graminis
PGTG_09249
N
0.000
PGTG_13387
Puccinia graminis
PGTG_13387
N
0.000
PGTG_14786
Puccinia graminis
PGTG_14786
N
0.000
PTTG_05198
Puccinia triticina
PTTG_05198
N
0.000
PTTG_06540
Puccinia triticina
PTTG_06540
N
0.000