CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPH2
(
Pteropus vampyrus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPVAG00000001571
T40835_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.995
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPVAP00000001480
RRM
13
84
VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSPVAP00000001480
RRM
113
182
VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
ENSPVAP00000001480
RRM
291
358
VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE
Links
Other
RRM
family RBPs
Other
Pteropus vampyrus
RBPs
94 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
136083
Helobdella robusta
136083
I
0.000
AAEL003979
Aedes aegypti
AAEL003979
I
0.000
amel4_ncbi_hmm2201
Apis mellifera
amel4_ncbi_hmm2201
I
0.000
BGIBMGA005893
Bombyx mori
BGIBMGA005893
I
0.000
CELF6
Anolis carolinensis
ENSACAG00000006079
I
0.000
CELF5
Anolis carolinensis
ENSACAG00000016959
I
0.000
CELF5
Callithrix jacchus
ENSCJAG00000014799
I
0.000
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.000
CELF5
Cavia porcellus
ENSCPOG00000005740
I
0.000
ENSFCAG00000007908
Felis catus
ENSFCAG00000007908
N
0.000
BRUNOL6
Homo sapiens
ENSG00000140488
D
0.000
CELF3
Homo sapiens
ENSG00000159409
I
0.000
CELF5
Gasterosteus aculeatus
ENSGACG00000012870
I
0.000
CELF6
Gasterosteus aculeatus
ENSGACG00000016626
I
0.000
A5A2G4_CHICK
Gallus gallus
ENSGALG00000001966
I
0.000
A5A2G2_CHICK
Gallus gallus
ENSGALG00000002413
I
0.000
CELF5
Gorilla gorilla
ENSGGOG00000002078
I
0.000
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.000
HEXA
Macaca mulatta
ENSMMUG00000010687
I
0.000
CELF5
Macaca mulatta
ENSMMUG00000015513
I
0.000
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.000
CELF5
Monodelphis domestica
ENSMODG00000019151
I
0.000
CELF3
Ornithorhynchus anatinus
ENSOANG00000004406
N
0.000
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.000
CELF5
Ochotona princeps
ENSOPRG00000007881
I
0.000
CELF6
Oryzias latipes
ENSORLG00000013392
I
0.000
CELF6
Pan troglodytes
ENSPTRG00000034360
I
0.000
Brunol4
Rattus norvegicus
ENSRNOG00000014503
I
0.000
CELF3
Tupaia belangeri
ENSTBEG00000010130
I
0.000
BRUNOL4
Taeniopygia guttata
ENSTGUG00000001649
I
0.000
CELF3
Tetraodon nigroviridis
ENSTNIG00000001919
I
0.000
CELF5
Tetraodon nigroviridis
ENSTNIG00000010634
I
0.000
CELF6
Takifugu rubripes
ENSTRUG00000012391
I
0.000
CELF5
Takifugu rubripes
ENSTRUG00000017937
I
0.000
ENSXETG00000021745
Xenopus tropicalis
ENSXETG00000021745
I
0.000
e_gw.982.9.1
Nematostella vectensis
e_gw.982.9.1
I
0.000
GF10965
Drosophila ananassae
FBgn0088005
I
0.000
GF19661
Drosophila ananassae
FBgn0096668
I
0.000
GG13757
Drosophila erecta
FBgn0106020
I
0.000
GG23781
Drosophila erecta
FBgn0115920
I
0.000
GI17947
Drosophila mojavensis
FBgn0140687
I
0.000
GL21647
Drosophila persimilis
FBgn0159240
I
0.000
GM24582
Drosophila sechellia
FBgn0179445
I
0.000
GM26796
Drosophila sechellia
FBgn0181649
I
0.000
GD12651
Drosophila simulans
FBgn0184378
I
0.000
GD23834
Drosophila simulans
FBgn0195204
I
0.000
GK17101
Drosophila willistoni
FBgn0219100
I
0.000
GE20053
Drosophila yakuba
FBgn0237378
I
0.000
GA28624-RA
Drosophila pseudoobscura
FBgn0249984
I
0.000
bru-3
Drosophila melanogaster
FBgn0262350
D
0.000
fgenesh2_pm.scaffold_186000008
Branchiostoma floridae
fgenesh2_pm.scaffold_186000008
I
0.000
gw1.77.52.1
Daphnia pulex
gw1.77.52.1
I
0.000
ISCW008885
Ixodes scapularis
ISCW008885
I
0.000
ISCW010799
Ixodes scapularis
ISCW010799
I
0.000
NCBI_GNO_268900001
Daphnia pulex
NCBI_GNO_268900001
I
0.000
PHUM315130
Pediculus humanus
PHUM315130
I
0.000
SNAPOd2T00007754001
Oikopleura dioica
SNAPOd2T00007754001
I
0.000
WUBG_04928
Wuchereria bancrofti
WUBG_04928
I
0.000