CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSSTOG00000009092
(
Spermophilus tridecemlineatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSTOG00000009092
T41618_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.964
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.786
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.786
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.786
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.764
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000008144
RRM
12
81
LFIGGLSFETTEDSLRNYYGQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVE
ENSSTOP00000008144
RRM
103
172
LFVGGIKGDTEEHHLRDYFAGYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE
Links
Other
RRM
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
186 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.C_scaffold_2336000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_2336000001
N
0.000
s_456796
Phytophthora sojae
s_456796
N
0.000