hnrnpa3 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000059351 T36189_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.821
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.821
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.821
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.800
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000076880 RRM 15 84
ENSDARP00000076880 RRM 106 175
ENSDARP00000076883 RRM 15 84
ENSDARP00000076883 RRM 106 175
ENSDARP00000093709 RRM 15 84
ENSDARP00000093709 RRM 106 174

Links

Other RRM family RBPs
Other Danio rerio RBPs

253 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.901
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.886
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.873
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.864
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.859
P51968 Xenopus laevis P51968 I 0.857
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.857
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.857
AAA49949 Xenopus laevis AAA49949 I 0.857
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.857
AAI69881 Xenopus laevis AAI69881 I 0.852
AAA49950 Xenopus laevis AAA49950 I 0.852
P51992 Xenopus laevis P51992 I 0.852
CBF67578 Xenopus laevis CBF67578 I 0.852
CBU92451 Xenopus laevis CBU92451 I 0.852
Gm8991 Mus musculus ENSMUSG00000059179 I 0.850
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.850
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.850
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.850
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.844
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.844
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.844
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.844
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.844
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.844
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.844
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.844
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.844
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.844
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.844
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.844
LOC781499 Bos taurus ENSBTAG00000021580 I 0.844
HNRNPA3 Homo sapiens ENSG00000170144 I 0.844
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.844
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.844
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.844
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.844
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.844
LOC100066794 Equus caballus ENSECAG00000023237 I 0.843
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.843
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.843
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.837
AAH45260 Xenopus laevis AAH45260 I 0.836
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.836
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.836
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.829
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.829
AAH72090 Xenopus laevis AAH72090 I 0.829
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.829
CBU92546 Xenopus laevis CBU92546 I 0.829
CBF67672 Xenopus laevis CBF67672 I 0.829
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.821
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.821
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.821
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.821
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.821
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.821
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.821
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.821
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.821
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.821
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.821
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.821
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.821
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.821
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.821
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.821
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.821
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.821
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.821
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.821
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.821
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.821
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.821
HNRNPA1 Homo sapiens ENSG00000135486 D 0.821
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.821
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.821
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.821
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.821
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.821
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.816
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.814
CBF67555 Xenopus laevis CBF67555 I 0.814
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.814
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.814
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.814
AAA49741 Xenopus laevis AAA49741 I 0.814
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.814
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.814
CBU92428 Xenopus laevis CBU92428 I 0.814
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.814
AAA49742 Xenopus laevis AAA49742 I 0.814
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.814
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.814
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.814
P17130 Xenopus laevis P17130 I 0.814
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.809
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.807
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.807
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.807
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.807
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.807
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.800
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.800
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.800
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.800
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.800
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.800
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.800
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.800
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.794
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.794
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.793
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.793
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.793
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.793
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.793
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.789
LOC785445 Bos taurus ENSBTAG00000025621 I 0.787
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.786
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.786
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.786
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.786
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.786
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.780
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.780
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.779
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.779
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.779
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.779
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.779
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.779
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.773
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.773
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.771
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.771
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.771
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.771
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.771
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.771
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.771
zgc:66127 Danio rerio ENSDARG00000011020 I 0.771
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.771
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.771
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.768
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.766
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.766
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.766
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.766
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.759
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.759
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.757
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.755
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.755
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.754
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.752
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.752
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.752
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.752
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.752
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.746
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.746
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.745
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.745
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.745
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.745
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.745
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.745
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.739
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.739
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.738
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.738
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.738
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.738
LOC100068539 Equus caballus ENSECAG00000000782 I 0.738
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.738
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.738
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.738
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.738
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.738
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.738
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.738
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.738
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.738
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.738
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.738
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.738
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.738
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.738
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.738
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.738
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.738
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.738
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.738
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.738
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.738
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.738
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.738
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.738
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.738
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.738
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.738
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.734
LOC100054206 Equus caballus ENSECAG00000006699 I 0.732
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.732
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.732
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.731
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.731
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.731
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.730
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.730
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.730
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.729
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.727
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.724
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.723
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.723
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.723
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.723
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.723
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.723
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.721
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.718
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.718
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.718
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.716
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.716
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.714
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.713
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.713
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.711
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.711
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.711
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.711
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.711
AAB59951 Xenopus laevis AAB59951 I 0.710
AAI06633 Xenopus laevis AAI06633 I 0.710
AAH46692 Xenopus laevis AAH46692 I 0.710
AAH43750 Xenopus laevis AAH43750 I 0.710
AAA49948 Xenopus laevis AAA49948 I 0.710
CBU92450 Xenopus laevis CBU92450 I 0.710
CBF67577 Xenopus laevis CBF67577 I 0.710
P51989 Xenopus laevis P51989 I 0.710
P51990 Xenopus laevis P51990 I 0.710
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.709
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.709
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.707
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.707
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.704
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.702
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.702
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.700