ENSTNIG00000015047 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000015047 T42132_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.850
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.850
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.850
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.829
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000001582 RRM 15 84
ENSTNIP00000001582 RRM 106 175
ENSTNIP00000018098 RRM 15 84
ENSTNIP00000018098 RRM 106 175

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

263 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.979
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.914
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.900
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.857
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.857
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.857
HNRNPA1 Homo sapiens ENSG00000135486 D 0.850
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.850
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.850
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.850
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.850
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.850
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.850
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.850
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.850
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.850
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.850
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.850
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.850
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.850
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.850
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.850
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.850
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.850
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.850
CBU92546 Xenopus laevis CBU92546 I 0.850
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.850
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.850
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.850
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.850
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.850
CBF67672 Xenopus laevis CBF67672 I 0.850
AAH72090 Xenopus laevis AAH72090 I 0.850
AAH45260 Xenopus laevis AAH45260 I 0.850
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.850
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.850
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.843
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.843
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.843
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.843
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.843
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.843
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.843
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.843
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.843
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.837
CBF67555 Xenopus laevis CBF67555 I 0.836
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.836
AAA49741 Xenopus laevis AAA49741 I 0.836
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.836
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.836
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.836
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.836
AAA49742 Xenopus laevis AAA49742 I 0.836
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.836
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.836
CBU92428 Xenopus laevis CBU92428 I 0.836
P17130 Xenopus laevis P17130 I 0.836
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.829
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.829
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.829
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.829
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.829
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.829
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.829
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.829
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.829
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.829
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.829
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.829
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.824
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.823
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.823
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.823
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.823
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.823
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.823
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.823
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.823
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.823
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.823
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.823
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.823
LOC781499 Bos taurus ENSBTAG00000021580 I 0.823
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.823
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.823
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.823
HNRNPA3 Homo sapiens ENSG00000170144 I 0.823
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.823
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.823
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.821
Gm8991 Mus musculus ENSMUSG00000059179 I 0.821
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.821
LOC100066794 Equus caballus ENSECAG00000023237 I 0.821
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.821
P51968 Xenopus laevis P51968 I 0.821
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.821
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.821
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.821
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.821
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.821
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.821
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.821
AAA49949 Xenopus laevis AAA49949 I 0.821
AAA49950 Xenopus laevis AAA49950 I 0.817
AAI69881 Xenopus laevis AAI69881 I 0.817
CBF67578 Xenopus laevis CBF67578 I 0.817
CBU92451 Xenopus laevis CBU92451 I 0.817
P51992 Xenopus laevis P51992 I 0.817
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.816
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.814
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.814
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.814
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.810
LOC785445 Bos taurus ENSBTAG00000025621 I 0.809
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.807
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.807
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.807
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.807
zgc:66127 Danio rerio ENSDARG00000011020 I 0.807
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.807
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.803
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.801
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.801
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.801
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.800
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.800
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.800
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.796
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.794
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.793
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.793
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.787
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.787
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.782
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.782
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.780
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.780
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.780
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.780
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.775
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.773
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.773
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.773
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.773
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.773
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.773
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.773
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.773
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.771
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.771
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.771
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.768
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.768
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.766
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.766
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.766
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.766
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.762
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.761
LOC100054206 Equus caballus ENSECAG00000006699 I 0.761
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.759
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.759
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.759
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.757
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.757
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.754
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.752
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.752
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.752
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.752
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.752
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.752
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.752
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.750
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.750
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.750
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.750
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.750
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.748
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.746
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.746
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.746
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.745
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.745
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.745
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.745
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.745
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.745
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.743
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.739
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.739
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.738
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.738
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.736
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.736
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.736
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.734
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.734
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.732
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.732
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.732
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.731
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.731
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.731
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.731
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.731
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.731
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.731
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.731
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.731
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.731
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.731
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.731
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.731
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.731
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.731
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.731
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.731
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.731
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.731
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.731
LOC100068539 Equus caballus ENSECAG00000000782 I 0.731
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.731
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.731
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.731
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.731
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.731
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.731
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.731
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.731
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.730
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.730
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.728
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.727
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.725
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.725
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.724
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.724
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.720
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.719
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.718
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.718
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.718
P51989 Xenopus laevis P51989 I 0.717
CBF67577 Xenopus laevis CBF67577 I 0.717
CBU92450 Xenopus laevis CBU92450 I 0.717
AAH46692 Xenopus laevis AAH46692 I 0.717
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.717
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.717
AAA49948 Xenopus laevis AAA49948 I 0.717
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.716
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.716
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.713
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.710
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.710
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.707
AAI06633 Xenopus laevis AAI06633 I 0.703
AAB59951 Xenopus laevis AAB59951 I 0.703
AAH43750 Xenopus laevis AAH43750 I 0.703
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.703
P51990 Xenopus laevis P51990 I 0.703