ENSCJAG00000008584 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000008584 T35554_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.843
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.843
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.843
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.829
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000015831 RRM 15 84
ENSCJAP00000015831 RRM 106 173
ENSCJAP00000017141 RRM 15 84
ENSCJAP00000017141 RRM 106 173

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

260 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.937
LOC100066794 Equus caballus ENSECAG00000023237 I 0.936
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.936
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.936
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.935
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.930
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.930
LOC781499 Bos taurus ENSBTAG00000021580 I 0.930
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.930
HNRNPA3 Homo sapiens ENSG00000170144 I 0.930
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.930
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.930
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.930
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.930
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.930
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.930
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.930
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.930
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.930
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.930
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.930
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.930
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.930
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.929
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.929
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.929
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.929
Gm8991 Mus musculus ENSMUSG00000059179 I 0.929
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.923
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.915
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.908
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.901
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.894
AAA49949 Xenopus laevis AAA49949 I 0.894
P51968 Xenopus laevis P51968 I 0.894
AAA49950 Xenopus laevis AAA49950 I 0.881
AAI69881 Xenopus laevis AAI69881 I 0.881
CBF67578 Xenopus laevis CBF67578 I 0.881
CBU92451 Xenopus laevis CBU92451 I 0.881
P51992 Xenopus laevis P51992 I 0.881
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.879
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.873
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.872
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.865
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.859
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.858
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.858
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.853
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.849
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.844
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.844
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.837
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.837
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.830
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.830
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.830
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.823
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.823
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.823
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.823
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.823
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.823
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.823
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.823
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.823
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.823
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.823
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.823
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.823
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.823
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.823
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.823
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.823
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.823
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.823
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.823
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.823
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.823
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.823
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.823
HNRNPA1 Homo sapiens ENSG00000135486 D 0.823
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.823
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.823
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.823
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.823
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.816
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.816
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.816
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.816
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.816
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.810
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.809
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.809
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.809
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.809
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.809
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.809
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.809
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.809
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.809
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.809
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.801
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.801
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.801
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.801
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.801
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.801
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.801
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.801
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.801
CBU92546 Xenopus laevis CBU92546 I 0.794
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.794
AAH72090 Xenopus laevis AAH72090 I 0.794
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.794
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.794
AAH45260 Xenopus laevis AAH45260 I 0.794
CBF67672 Xenopus laevis CBF67672 I 0.794
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.787
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.787
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.787
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.787
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.787
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.787
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.787
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.782
LOC785445 Bos taurus ENSBTAG00000025621 I 0.782
AAA49742 Xenopus laevis AAA49742 I 0.780
AAA49741 Xenopus laevis AAA49741 I 0.780
CBU92428 Xenopus laevis CBU92428 I 0.780
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.780
CBF67555 Xenopus laevis CBF67555 I 0.780
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.780
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.780
P17130 Xenopus laevis P17130 I 0.780
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.780
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.777
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.775
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.773
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.773
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.773
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.770
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.769
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.769
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.769
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.769
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.768
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.766
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.766
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.766
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.764
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.764
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.762
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.761
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.761
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.761
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.760
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.757
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.755
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.755
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.755
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.754
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.754
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.754
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.754
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.754
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.750
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.750
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.748
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.748
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.748
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.748
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.747
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.746
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.746
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.746
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.746
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.745
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.743
LOC100054206 Equus caballus ENSECAG00000006699 I 0.741
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.740
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.740
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.740
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.739
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.739
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.738
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.738
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.736
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.734
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.734
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.732
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.732
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.732
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.732
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.732
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.729
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.727
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.725
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.725
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.725
zgc:66127 Danio rerio ENSDARG00000011020 I 0.723
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.723
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.722
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.720
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.720
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.720
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.720
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.718
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.718
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.718
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.718
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.718
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.718
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.718
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.716
D3ZHS1_RAT Rattus norvegicus ENSRNOG00000017364 N 0.715
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.713
HNRNPA3 Canis familiaris ENSCAFG00000015889 I 0.711
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.709
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.707
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.706
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.706
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.706
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.704
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.704
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.704
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.703
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.703
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.703
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.703
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.703
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.703
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.703
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.703
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.703
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.703
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.703
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.703
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.703
LOC100068539 Equus caballus ENSECAG00000000782 I 0.703
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.703
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.703
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.703
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.703
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.703
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.703
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.703
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.703
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.703
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.703
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.703
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.703
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.703
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.703
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.703
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.703
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.703
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.701
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.701
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.701