CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MYEF2
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000016967
T42368_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000043454
RRM
261
329
IFVRNLSYDLTWQKLKEKFGHCGQVMFAEIKMENGKSKGCGTVRFDSPESAEKACRLMNGSKINGREVD
ENSTRUP00000043455
RRM
81
151
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAIETMNKHDLSGRPLN
ENSTRUP00000043455
RRM
214
286
VFVANLDFKVGWKKLKEVFGIAGIVKRADVKEDKDGKSRGMGTVTFDQPLEAVQAISHPAMFNGQMLFDRQMH
ENSTRUP00000043455
RRM
493
561
IFVRNLSYDLTWQKLKEKFGHCGQVMFAEIKMENGKSKGCGTVRFDSPESAEKACRLMNGSKINGREVD
ENSTRUP00000043456
RRM
38
108
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAIETMNKHDLSGRPLN
ENSTRUP00000043456
RRM
171
243
VFVANLDFKVGWKKLKEVFGIAGIVKRADVKEDKDGKSRGMGTVTFDQPLEAVQAISHPAMFNGQMLFDRQMH
ENSTRUP00000043456
RRM
541
609
IFVRNLSYDLTWQKLKEKFGHCGQVMFAEIKMENGKSKGCGTVRFDSPESAEKACRLMNGSKINGREVD
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
68 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH74333
Xenopus laevis
AAH74333
N
0.000
AAI33216
Xenopus laevis
AAI33216
N
0.000
CBG15694
Caenorhabditis briggsae
CBG15694
N
0.000
CBN14493
Caenorhabditis brenneri
CBN14493
N
0.000
PCBP3
Canis familiaris
ENSCAFG00000011907
N
0.000
pcbp3
Danio rerio
ENSDARG00000054378
I
0.000
zgc:110045
Danio rerio
ENSDARG00000057141
N
0.000
Pcbp3
Dipodomys ordii
ENSDORG00000003640
N
0.000
Pcbp3
Mus musculus
ENSMUSG00000001120
D
0.000
PCBP3
Ornithorhynchus anatinus
ENSOANG00000006265
N
0.000
Pcbp3
Rattus norvegicus
ENSRNOG00000001245
I
0.000
PCBP3
Takifugu rubripes
ENSTRUG00000013604
I
0.000
PHUM522820
Pediculus humanus
PHUM522820
N
0.000
WUBG_05097
Wuchereria bancrofti
WUBG_05097
N
0.000
pes-4
Caenorhabditis elegans
Y119D3B.17
N
0.000