sf3b4 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000011038 T42871_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		1.000
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.875
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.799
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000024144 RRM 4 74
ENSXETP00000024144 RRM 91 162

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

132 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACH69784 Xenopus laevis ACH69784 I 0.000
ACH69785 Xenopus laevis ACH69785 I 0.000
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.000
A6H776_BOVIN Bos taurus ENSBTAG00000004940 I 0.000
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.000
celf5 Danio rerio ENSDARG00000071375 I 0.000
ENSDARG00000076682 Danio rerio ENSDARG00000076682 I 0.000
BRUNOL4 Homo sapiens ENSG00000101489 D 0.000
BRUNOL5 Homo sapiens ENSG00000161082 D 0.000
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.000
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.000
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.000
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.000
CELF4 Macaca mulatta ENSMMUG00000006866 I 0.000
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.000
Celf4 Mus musculus ENSMUSG00000024268 I 0.000
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.000
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.000
CELF5 Oryzias latipes ENSORLG00000004600 I 0.000
CELF4 Oryzias latipes ENSORLG00000008913 I 0.000
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.000
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.000
CELF4 Tetraodon nigroviridis ENSTNIG00000010679 I 0.000
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.000
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.000
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.000
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.000