Ame_R001963 (Ailuropoda melanoleuca)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Ame_R001963 T05941_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R001963 CCCH ZF 1 20
Ame_R001963 CCCH ZF 24 49
Ame_R001963 CCCH ZF 148 173
Ame_R001963 CCCH ZF 306 331

Links

Other CCCH ZF family RBPs
Other Ailuropoda melanoleuca RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MKRN1 Anolis carolinensis ENSACAG00000010934 N 0.837
Mkrn1 Mus musculus ENSMUSG00000029922 N 0.959
ENSOCUG00000010180 Oryctolagus cuniculus ENSOCUG00000010180 N 0.990
ENSOGAG00000009877 Otolemur garnettii ENSOGAG00000009877 N 0.918
MKRN1 Ochotona princeps ENSOPRG00000010353 N 0.875
MKRN1 Oryzias latipes ENSORLG00000012765 N 0.752
MKRN1 Procavia capensis ENSPCAG00000014683 N 0.908
ENSPPYG00000018057 Pongo pygmaeus ENSPPYG00000018057 N 0.980
ENSPPYG00000020255 Pongo pygmaeus ENSPPYG00000020255 N 0.837
XR_024878.1 Pan troglodytes ENSPTRG00000019766 N 0.923
Q68FR1_RAT Rattus norvegicus ENSRNOG00000009280 N 0.913
MKRN1 Sorex araneus ENSSARG00000013683 N 0.909
MKRN1 Sus scrofa ENSSSCG00000016498 N 0.942
MKRN1 Taeniopygia guttata ENSTGUG00000011669 N 0.837
MKRN1 Tarsius syrichta ENSTSYG00000009996 N 0.929
MKRN1 Tursiops truncatus ENSTTRG00000009528 N 0.942
AAH74368 Xenopus laevis AAH74368 N 0.767
ENSMODG00000013686 Monodelphis domestica ENSMODG00000013686 N 0.827
MKRN1 Macaca mulatta ENSMMUG00000010420 N 0.990
ENSCAFG00000003953 Canis familiaris ENSCAFG00000003953 N 0.990
MKRN1 Choloepus hoffmanni ENSCHOG00000011015 N 0.942
MKRN1 Callithrix jacchus ENSCJAG00000004068 N 0.788
ENSCPOG00000000948 Cavia porcellus ENSCPOG00000000948 N 0.970
mkrn1 Danio rerio ENSDARG00000041665 N 0.726
LOC100065893 Equus caballus ENSECAG00000017929 N 1.000
MKRN1 Felis catus ENSFCAG00000013043 N 0.990
MKRN1 Homo sapiens ENSG00000133606 N 0.959
MKRN1 Gasterosteus aculeatus ENSGACG00000019227 N 0.708
Q9PTI4_CHICK Gallus gallus ENSGALG00000012852 N 0.817
ENSGGOG00000023977 Gorilla gorilla ENSGGOG00000023977 N 0.933
MKRN1 Loxodonta africana ENSLAFG00000018408 N 0.923
MKRN1_MACEU Macropus eugenii ENSMEUG00000007399 N 0.827
MKRN1 Meleagris gallopavo ENSMGAG00000013208 N 0.857
MKRN1 Microcebus murinus ENSMICG00000002114 N 0.904
ENSMMUG00000001017 Macaca mulatta ENSMMUG00000001017 N 0.779
Q6GLT5 Xenopus laevis Q6GLT5 N 0.767