SB09G001910 (Sorghum bicolor)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		Sb09g001910 T07431_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb09g001910.1 RRM 13 75
Sb09g001910.1 CCHC ZF 102 119
Sb09g001910.1 CCHC ZF 124 141

Links

Other CCHC ZF,RRM family RBPs
Other Sorghum bicolor RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK26144.1 Cannabis sativa PK26144.1 N 0.788
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.838
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.818
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.798
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.808
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.798
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.818
mgf009930m Mimulus guttatus mgf009930m N 0.808
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.899
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.970
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.899
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.970
AC235022_4 Medicago truncatula AC235022_4 N 0.788
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.828
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.828
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.758
ppa009074m Prunus persica ppa009074m N 0.808
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.838
29805.m001527 Ricinus communis 29805.m001527 N 0.838
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.798
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.818
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.788
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.919
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.788
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.818
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.899
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.818
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.828
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.788
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.949
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.919
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.808
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.818
SB03G005500 Sorghum bicolor Sb03g005500 N 0.747
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.909
ppa009294m Prunus persica ppa009294m N 0.798