GRMZM2G099186 (Zea mays)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		GRMZM2G099186 T07609_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G099186_P02 RRM 13 75
GRMZM2G099186_P02 CCHC ZF 102 119
GRMZM2G099186_P02 CCHC ZF 124 141
GRMZM2G099186_P03 CCHC ZF 10 27
GRMZM2G099186_P03 CCHC ZF 32 49
GRMZM2G099186_P04 RRM 56 87
GRMZM2G099186_P05 RRM 56 79

Links

Other CCHC ZF,RRM family RBPs
Other Zea mays RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK26144.1 Cannabis sativa PK26144.1 N 0.778
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.848
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.828
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.808
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.808
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.808
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.808
mgf009930m Mimulus guttatus mgf009930m N 0.808
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.972
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.949
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.944
AC235022_4 Medicago truncatula AC235022_4 N 0.788
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.828
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.828
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.768
ppa009074m Prunus persica ppa009074m N 0.808
ppa009294m Prunus persica ppa009294m N 0.808
GRMZM2G065284 Zea mays GRMZM2G065284 N 0.722
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.848
29805.m001527 Ricinus communis 29805.m001527 N 0.848
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.889
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.808
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.737
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.889
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.788
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.798
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.919
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.808
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.818
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.737
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.899
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.889
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.838
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.828
SB03G005500 Sorghum bicolor Sb03g005500 N 0.758
SB09G001910 Sorghum bicolor Sb09g001910 N 0.899
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.970
PK01121.1 Cannabis sativa PK01121.1 N 0.750