YBX1 (Procavia capensis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSPCAG00000008397 T16972_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.718
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000007821 CSD 76 128

Links

Other CSD family RBPs
Other Procavia capensis RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH77813 Xenopus laevis AAH77813 N 0.000
CG11266 Drosophila melanogaster FBgn0031883 N 0.000
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.000
RBM39 Tursiops truncatus ENSTTRG00000017039 N 0.000
RBM39 Tarsius syrichta ENSTSYG00000005605 N 0.000
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.000
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.000
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.000
RBM39 Sus scrofa ENSSSCG00000007309 N 0.000
RBM39 Sorex araneus ENSSARG00000007673 N 0.000
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 0.000
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 0.000
GA10876-RA Drosophila pseudoobscura FBgn0070932 N 0.000
GF14957 Drosophila ananassae FBgn0091982 N 0.000
GG10454 Drosophila erecta FBgn0102763 N 0.000
AAH75146 Xenopus laevis AAH75146 N 0.000
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 0.000
estExt_Genewise1Plus.C_150014 Daphnia pulex estExt_Genewise1Plus.C_150014 N 0.000
estExt_Genewise1.C_sca_90322 Lottia gigantea estExt_Genewise1.C_sca_90322 N 0.000
PHUM394230 Pediculus humanus PHUM394230 N 0.000
GE14328 Drosophila yakuba FBgn0231943 N 0.000
GK15272 Drosophila willistoni FBgn0217277 N 0.000
GD23448 Drosophila simulans FBgn0194830 N 0.000
GM16278 Drosophila sechellia FBgn0171194 N 0.000
GI10246 Drosophila mojavensis FBgn0133011 N 0.000
GH13506 Drosophila grimshawi FBgn0120982 N 0.000
RBM39 Pan troglodytes ENSPTRG00000013449 N 0.000
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 0.000
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.000
RBM39 Canis familiaris ENSCAFG00000008327 N 0.000
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 0.000
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.000
CPIJ019416 Culex quinquefasciatus CPIJ019416 N 0.000
CPIJ014704 Culex quinquefasciatus CPIJ014704 N 0.000
AGAP008433 Anopheles gambiae AGAP008433 N 0.000
AAEL005046 Aedes aegypti AAEL005046 N 0.000
DGIL_AUG5s7518g10t1 Acyrtosiphon pisum DGIL_AUG5s7518g10t1 N 0.000
amel4_ncbi_hmm11379 Apis mellifera amel4_ncbi_hmm11379 N 0.000
CpipJ_CPIJ019416 Culex pipiens CpipJ_CPIJ019416 N 0.000
rbm39a Danio rerio ENSDARG00000011613 N 0.000
rbm39b Danio rerio ENSDARG00000041853 N 0.000
RBM39 Equus caballus ENSECAG00000013423 N 0.000
RBM23 Oryzias latipes ENSORLG00000010370 N 0.000
RBM23 Oryzias latipes ENSORLG00000009919 N 0.000
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 0.000
Rbm39 Mus musculus ENSMUSG00000027620 N 0.000
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.000
RBM39 Microcebus murinus ENSMICG00000001668 N 0.000
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.000
RBM39 Loxodonta africana ENSLAFG00000010346 N 0.000
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.000
RBM39 Gallus gallus ENSGALG00000001550 N 0.000
RBM39 Homo sapiens ENSG00000131051 N 0.000
CpipJ_CPIJ014704 Culex pipiens CpipJ_CPIJ014704 N 0.000