AT3G08620 (Arabidopsis thaliana)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 AT3G08620-TAIR-G T18096_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G08620.1-P KH 147 220

Links

Other KH family RBPs
Other Arabidopsis thaliana RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009701m Prunus persica ppa009701m N 0.880
Medtr3g083820 Medicago truncatula Medtr3g083820 N 0.811
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.816
GRMZM2G108677 Zea mays GRMZM2G108677 N 0.737
GRMZM2G063643 Zea mays GRMZM2G063643 N 0.776
mgf011994m Mimulus guttatus mgf011994m N 0.750
mgf005196m Mimulus guttatus mgf005196m N 0.853
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.867
Glyma18g05680.1 Glycine max Glyma18g05680.1 N 0.711
Glyma16g34750.1 Glycine max Glyma16g34750.1 N 0.853
Glyma14g38730.1 Glycine max Glyma14g38730.1 N 0.797
Medtr7g080640 Medicago truncatula Medtr7g080640 N 0.868
Medtr8g005290 Medicago truncatula Medtr8g005290 N 0.840
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.838
MDP0000665847 Malus x domestica MDP0000665847 N 0.867
MDP0000501473 Malus x domestica MDP0000501473 N 0.853
MDP0000268130 Malus x domestica MDP0000268130 N 0.703
MDP0000186494 Malus x domestica MDP0000186494 N 0.867
MDP0000119110 Malus x domestica MDP0000119110 N 0.853
MDP0000077753 Malus x domestica MDP0000077753 N 0.703
LjT28H07.110.nc Lotus japonicus LjT28H07.110.nc N 0.867
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.855
Medtr8g005390 Medicago truncatula Medtr8g005390 N 0.840
Glyma11g31530.1 Glycine max Glyma11g31530.1 N 0.773
Glyma09g40820.1 Glycine max Glyma09g40820.1 N 0.880
POPTR_0016s14760 Populus trichocarpa POPTR_0016s14760 N 0.788
B9I777_POPTR Populus trichocarpa POPTR_0013s15580 N 0.784
B9IGX2_POPTR Populus trichocarpa POPTR_0006s11210 N 0.880
LOC_Os03g60110 Oryza sativa LOC_Os03g60110 N 0.770
GSVIVG00029865001 Vitis vinifera GSVIVG00029865001 N 0.840
XM_002881558.1 Arabidopsis lyrata fgenesh2_kg.4__1930__AT2G38610.2 N 0.846
XM_002882529.1 Arabidopsis lyrata fgenesh2_kg.3__864__AT3G08620.1 N 0.959
BGIOSIBCE013438 Oryza indica BGIOSIBCE013438 N 0.743
AT2G38610 Arabidopsis thaliana AT2G38610-TAIR-G N 0.846
PK23097.1 Cannabis sativa PK23097.1 N 0.853
B9INJ7_POPTR Populus trichocarpa POPTR_0019s15270 N 0.811
SB01G003680 Sorghum bicolor Sb01g003680 N 0.750
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.807
Glyma02g40440.1 Glycine max Glyma02g40440.1 N 0.797
Cucsa.177080 Cucumis sativus Cucsa.177080 N 0.867
Cucsa.130740 Cucumis sativus Cucsa.130740 N 0.867
cassava39581.m1 Manihot esculenta cassava39581.m1 N 0.840
cassava38069.valid.m1 Manihot esculenta cassava38069.valid.m1 N 0.757
cassava25198.valid.m1 Manihot esculenta cassava25198.valid.m1 N 0.827
29945.m000086 Ricinus communis 29945.m000086 N 0.757
27955.m000377 Ricinus communis 27955.m000377 N 0.853
SB02G006770 Sorghum bicolor Sb02g006770 N 0.803
PK22673.1 Cannabis sativa PK22673.1 N 0.811