CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM418100
(
Pediculus humanus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
PHUM418100
T20178_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG11360
M122_0.6
Drosophila melanogaster
GAGUDW
RNAcompete
Ray et al.(2013)
RNCMPT00129
0.721
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM418100-PA
KH
24
66
RGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAKAKREI
PHUM418100-PA
KH
105
164
TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVSGLPENVQVAKREI
Links
Other
KH
family RBPs
Other
Pediculus humanus
RBPs
134 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG11360
Drosophila melanogaster
FBgn0039920
D
0.721
MEX3C
Ornithorhynchus anatinus
ENSOANG00000008116
I
0.903
MEX3C
Pteropus vampyrus
ENSPVAG00000015135
I
0.762
Mex3c
Rattus norvegicus
ENSRNOG00000015777
I
0.762
D3ZFL6_RAT
Rattus norvegicus
ENSRNOG00000025142
I
0.913
MEX3B
Sorex araneus
ENSSARG00000006007
I
0.903
MEX3C
Sorex araneus
ENSSARG00000006940
I
0.893
MEX3C
Tupaia belangeri
ENSTBEG00000014438
I
0.893
MEX3D
Taeniopygia guttata
ENSTGUG00000000201
I
0.730
MEX3B
Tetraodon nigroviridis
ENSTNIG00000003398
I
0.754
MEX3D
Tetraodon nigroviridis
ENSTNIG00000015325
I
0.713
MEX3B
Takifugu rubripes
ENSTRUG00000000367
I
0.893
MEX3D
Takifugu rubripes
ENSTRUG00000007986
I
0.883
MEX3C
Takifugu rubripes
ENSTRUG00000011888
I
0.895
MEX3A
Pteropus vampyrus
ENSPVAG00000010333
I
0.712
MEX3B
Pteropus vampyrus
ENSPVAG00000000093
I
0.770
MEX3D
Pan troglodytes
ENSPTRG00000010208
I
0.705
MEX3B
Oryctolagus cuniculus
ENSOCUG00000011603
I
0.913
ENSOCUG00000012549
Oryctolagus cuniculus
ENSOCUG00000012549
I
0.762
MEX3B
Otolemur garnettii
ENSOGAG00000016362
I
0.874
MEX3D
Ochotona princeps
ENSOPRG00000008708
I
0.864
MEX3B
Ochotona princeps
ENSOPRG00000009604
I
0.770
MEX3C
Oryzias latipes
ENSORLG00000004985
I
0.770
MEX3C
Procavia capensis
ENSPCAG00000009258
I
0.770
MEX3D
Procavia capensis
ENSPCAG00000010972
I
0.864
MEX3B
Procavia capensis
ENSPCAG00000014150
I
0.903
ENSPPYG00000006723
Pongo pygmaeus
ENSPPYG00000006723
I
0.770
ENSPPYG00000009324
Pongo pygmaeus
ENSPPYG00000009324
I
0.705
MEX3B
Pan troglodytes
ENSPTRG00000007373
I
0.770
MEX3C
Pan troglodytes
ENSPTRG00000010029
I
0.762
MEX3C
Tursiops truncatus
ENSTTRG00000004570
I
0.762
MEX3D
Tursiops truncatus
ENSTTRG00000008132
I
0.705
MEX3C
Vicugna pacos
ENSVPAG00000003137
I
0.893
estExt_Genewise1.C_sca_540218
Lottia gigantea
estExt_Genewise1.C_sca_540218
I
0.779
gw.320.9.1
Nematostella vectensis
gw.320.9.1
I
0.730
BGIBMGA012436
Bombyx mori
BGIBMGA012436
I
0.864
Ame_R004658
Ailuropoda melanoleuca
Ame_R004658
I
0.762
Ame_R007174
Ailuropoda melanoleuca
Ame_R007174
I
0.770
Ame_R011921
Ailuropoda melanoleuca
Ame_R011921
I
0.857
XP_001175528.1
Strongylocentrotus purpuratus
XP_001175528.1
I
0.754
XP_002168292.1
Hydra magnipapillata
XP_002168292.1
I
0.730
XP_786425.2
Strongylocentrotus purpuratus
XP_786425.2
I
0.754
A1L3F4
Xenopus laevis
A1L3F4
I
0.770
AAI28670
Xenopus laevis
AAI28670
I
0.777
AAI30070
Xenopus laevis
AAI30070
I
0.770
AAI42552
Xenopus laevis
AAI42552
I
0.705
estExt_fgenesh2_pg.C_2010087
Branchiostoma floridae
estExt_fgenesh2_pg.C_2010087
I
0.779
e_gw1.3.1475.1
Trichoplax adhaerens
e_gw1.3.1475.1
I
0.845
mex3c
Xenopus tropicalis
ENSXETG00000022367
I
0.777
GA10947-RA
Drosophila pseudoobscura
FBgn0071003
I
0.721
GF20555
Drosophila ananassae
FBgn0097561
I
0.713
GG16398
Drosophila erecta
FBgn0108630
I
0.721
GH23938
Drosophila grimshawi
FBgn0131395
I
0.730
GL18139
Drosophila persimilis
FBgn0155742
I
0.721
GM26809
Drosophila sechellia
FBgn0181661
I
0.721
GD24410
Drosophila simulans
FBgn0195748
I
0.721
GJ18673
Drosophila virilis
FBgn0205827
I
0.730
GK13594
Drosophila willistoni
FBgn0215602
I
0.730
GE14558
Drosophila yakuba
FBgn0232157
I
0.721
e_gw1.15.409.1
Daphnia pulex
e_gw1.15.409.1
I
0.762
e_gw1.312.50.1
Capitella teleta
e_gw1.312.50.1
I
0.854
BAH79688
Xenopus laevis
BAH79688
I
0.770
nasonia_NCBI_hmm456104
Nasonia vitripennis
nasonia_NCBI_hmm456104
I
0.770
MEX3B
Cavia porcellus
ENSCPOG00000023663
I
0.705
MEX3B
Danio rerio
ENSDARG00000058369
I
0.762
MEX3C
Danio rerio
ENSDARG00000068971
I
0.864
MEX3C
Dasypus novemcinctus
ENSDNOG00000006544
I
0.762
MEX3B
Dasypus novemcinctus
ENSDNOG00000012736
I
0.767
MEX3B
Equus caballus
ENSECAG00000013497
I
0.770
MEX3C
Equus caballus
ENSECAG00000021727
I
0.762
MEX3C
Erinaceus europaeus
ENSEEUG00000010864
I
0.893
MEX3C
Echinops telfairi
ENSETEG00000003647
I
0.903
MEX3D
Felis catus
ENSFCAG00000002615
I
0.864
MEX3C
Homo sapiens
ENSG00000176624
I
0.762
MEX3D
Homo sapiens
ENSG00000181588
I
0.705
MEX3B
Homo sapiens
ENSG00000183496
I
0.770
MEX3C
Gasterosteus aculeatus
ENSGACG00000007490
I
0.762
amel4_ncbi_hmm6985
Apis mellifera
amel4_ncbi_hmm6985
I
0.779
MEX3C
Cavia porcellus
ENSCPOG00000009646
I
0.762
MEX3C
Anolis carolinensis
ENSACAG00000010265
I
0.903
MEX3B
Anolis carolinensis
ENSACAG00000011072
I
0.903
Q2YDI4_BOVIN
Bos taurus
ENSBTAG00000014886
I
0.903
MEX3B
Bos taurus
ENSBTAG00000016630
I
0.770
MEX3D
Bos taurus
ENSBTAG00000044028
I
0.874
MEX3C
Canis familiaris
ENSCAFG00000000162
I
0.769
MEX3B
Canis familiaris
ENSCAFG00000013759
I
0.913
MEX3D
Canis familiaris
ENSCAFG00000023712
I
0.874
MEX3C
Choloepus hoffmanni
ENSCHOG00000004915
I
0.762
ENSCING00000002603
Ciona intestinalis
ENSCING00000002603
I
0.770
MKNK2
Callithrix jacchus
ENSCJAG00000000539
I
0.821
LOC100410023
Callithrix jacchus
ENSCJAG00000001902
I
0.762
MEX3B
Callithrix jacchus
ENSCJAG00000008043
I
0.770
ENSCPOG00000008241
Cavia porcellus
ENSCPOG00000008241
I
0.770
MEX3B
Gasterosteus aculeatus
ENSGACG00000012530
I
0.738
MEX3C
Microcebus murinus
ENSMICG00000005815
I
0.893
MEX3C
Macaca mulatta
ENSMMUG00000023652
I
0.762
MEX3B
Loxodonta africana
ENSLAFG00000006027
I
0.913
MEX3B
Macaca mulatta
ENSMMUG00000018639
I
0.770
MEX3C
Loxodonta africana
ENSLAFG00000027818
I
0.762
MEX3B
Macropus eugenii
ENSMEUG00000002402
I
0.762
MEX3C
Myotis lucifugus
ENSMLUG00000012585
I
0.893
MEX3C
Macropus eugenii
ENSMEUG00000015929
I
0.893
Mex3d
Rattus norvegicus
ENSRNOG00000030830
I
0.705
MEX3D
Macropus eugenii
ENSMEUG00000016404
I
0.721
MEX3D
Meleagris gallopavo
ENSMGAG00000002325
I
0.893
MEX3D
Monodelphis domestica
ENSMODG00000004116
I
0.721
MEX3C
Monodelphis domestica
ENSMODG00000011001
I
0.762
MEX3C
Gorilla gorilla
ENSGGOG00000014875
I
0.762
MEX3D
Gallus gallus
ENSGALG00000001106
I
0.893
Mex3c
Dipodomys ordii
ENSDORG00000007962
I
0.893
Mex3b
Mus musculus
ENSMUSG00000057706
I
0.913
Mex3d
Mus musculus
ENSMUSG00000048696
I
0.705
Mex3c
Mus musculus
ENSMUSG00000037253
I
0.762
MEX3B
Gorilla gorilla
ENSGGOG00000000597
I
0.770
MEX3B
Monodelphis domestica
ENSMODG00000019387
I
0.913
MEX3D
Gorilla gorilla
ENSGGOG00000001083
I
0.705
MEX3D
Gasterosteus aculeatus
ENSGACG00000015299
I
0.705
MEX3A
Anolis carolinensis
ENSACAG00000003739
N
0.808
MEX3D
Myotis lucifugus
ENSMLUG00000017018
N
0.837
MEX3A
Takifugu rubripes
ENSTRUG00000007796
N
0.800
MEX3A
Meleagris gallopavo
ENSMGAG00000015563
N
0.808
MEX3A
Gasterosteus aculeatus
ENSGACG00000013282
N
0.816
MEX3A
Tetraodon nigroviridis
ENSTNIG00000004473
N
0.800
mex3a
Xenopus tropicalis
ENSXETG00000012704
N
0.808
MEX3A
Gallus gallus
ENSGALG00000014016
N
0.808
MEX3A
Sorex araneus
ENSSARG00000009868
N
0.816
LOC100063974
Equus caballus
ENSECAG00000007279
N
0.816
MEX3A
Taeniopygia guttata
ENSTGUG00000003692
N
0.800
MEX3A
Myotis lucifugus
ENSMLUG00000010185
N
0.816
MEX3A
Loxodonta africana
ENSLAFG00000009220
N
0.816
Ppa-mex-3
Pristionchus pacificus
PPA08528
N
0.750
143355
Helobdella robusta
143355
N
0.757
MEX3A
Pan troglodytes
ENSPTRG00000030373
N
0.816
143653
Helobdella robusta
143653
N
0.767