CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A1A4R7_BOVIN
(
Bos taurus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSBTAG00000004080
T34783_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
TIA1
M156_0.6
Homo sapiens
WUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00165
0.893
TIA1
M075_0.6
Homo sapiens
UUUUUBK
RNAcompete
Ray et al.(2013)
RNCMPT00077
0.893
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000005331
RRM
11
79
LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK
ENSBTAP00000005331
RRM
99
169
VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR
ENSBTAP00000005331
RRM
207
271
VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK
Links
Other
RRM
family RBPs
Other
Bos taurus
RBPs
73 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRUNOL5
Homo sapiens
ENSG00000161082
D
0.000
CELF5
Bos taurus
ENSBTAG00000021774
I
0.000
CELF5
Oryzias latipes
ENSORLG00000004600
I
0.000
CELF5
Procavia capensis
ENSPCAG00000002170
I
0.000
CELF5
Pan troglodytes
ENSPTRG00000010259
I
0.000
CELF5
Pteropus vampyrus
ENSPVAG00000014619
I
0.000
CELF5
Sus scrofa
ENSSSCG00000013476
I
0.000
BRUNOL5
Taeniopygia guttata
ENSTGUG00000000514
I
0.000
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.000
CELF5
Tursiops truncatus
ENSTTRG00000009625
I
0.000
celf5
Xenopus tropicalis
ENSXETG00000014344
I
0.000
Ame_R011948
Ailuropoda melanoleuca
Ame_R011948
I
0.000
CELF5
Otolemur garnettii
ENSOGAG00000014161
I
0.000
CELF3
Macaca mulatta
ENSMMUG00000016952
I
0.000
ACH69785
Xenopus laevis
ACH69785
I
0.000
CELF5
Canis familiaris
ENSCAFG00000019263
I
0.000
CELF5
Meleagris gallopavo
ENSMGAG00000001169
I
0.000
CELF6
Cavia porcellus
ENSCPOG00000025842
I
0.000
CELF3
Homo sapiens
ENSG00000159409
I
0.000
CELF5
Echinops telfairi
ENSETEG00000016221
I
0.000
celf4
Danio rerio
ENSDARG00000070045
I
0.000
celf5
Danio rerio
ENSDARG00000071375
I
0.000
CELF5
Equus caballus
ENSECAG00000018055
N
0.000
CELF5
Loxodonta africana
ENSLAFG00000026387
N
0.000
CELF3
Microcebus murinus
ENSMICG00000010644
N
0.000
CELF5
Myotis lucifugus
ENSMLUG00000006471
N
0.000