CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSDORG00000005431
(
Dipodomys ordii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDORG00000005431
T36450_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.848
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000005078
RRM
13
84
VKLRGLPWSCSIDDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIE
ENSDORP00000005078
RRM
113
182
VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE
ENSDORP00000005078
RRM
291
358
VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIE
Links
Other
RRM
family RBPs
Other
Dipodomys ordii
RBPs
92 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm16330
Apis mellifera
amel4_ncbi_hmm16330
I
0.000
DGIL_AUG5s5532g9t1
Acyrtosiphon pisum
DGIL_AUG5s5532g9t1
I
0.000
nasonia_NCBI_hmm938274
Nasonia vitripennis
nasonia_NCBI_hmm938274
I
0.000
PASA_GEN_0700132
Daphnia pulex
PASA_GEN_0700132
I
0.000
fgenesh1_pm.C_scaffold_76000004
Capitella teleta
fgenesh1_pm.C_scaffold_76000004
I
0.000
ISCW016289
Ixodes scapularis
ISCW016289
I
0.000
FBgn0262737
Drosophila melanogaster
FBgn0262737
N
0.000
GE22592
Drosophila yakuba
FBgn0239809
N
0.000
GK10610
Drosophila willistoni
FBgn0212625
N
0.000
GJ11921
Drosophila virilis
FBgn0199174
N
0.000
GI13561
Drosophila mojavensis
FBgn0136316
N
0.000
GG16232
Drosophila erecta
FBgn0108467
N
0.000
GA20351-RA
Drosophila pseudoobscura
FBgn0080346
N
0.000
AGAP004942
Anopheles gambiae
AGAP004942
N
0.000
BGIBMGA012503
Bombyx mori
BGIBMGA012503
N
0.000