CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000003302
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000003302
T40457_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000003787
RRM
45
115
MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM
ENSPPYP00000003787
RRM
137
205
LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS
ENSPPYP00000003787
RRM
427
497
LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKILGFVSYDNPVSAQAAIQSMNGFQIGMKRLK
ENSPPYP00000003788
RRM
18
88
MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM
ENSPPYP00000003788
RRM
110
178
LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS
ENSPPYP00000003788
RRM
404
474
LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKMLGFVSYDNPVSAQAAIQSMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
93 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1.C_220013
Postia placenta
estExt_Genewise1.C_220013
N
0.000
estExt_Genewise1Plus.C_21122
Schizophyllum commune
estExt_Genewise1Plus.C_21122
N
0.000
gwh1.2.40.1
Laccaria bicolor
gwh1.2.40.1
N
0.000
estExt_fgenesh2_pg.C_200047
Serpula lacrymans
estExt_fgenesh2_pg.C_200047
N
0.000
estExt_fgenesh2_pg.C_20480
Agaricus bisporus
estExt_fgenesh2_pg.C_20480
N
0.000
estExt_Genewise1Plus.C_11031
Pleurotus ostreatus
estExt_Genewise1Plus.C_11031
N
0.000
EuGene2000855
Heterobasidion annosum
EuGene2000855
N
0.000