LOC_Os02g03040 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os02g03040 T44950_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os02g03040.1 RRM 4 65
LOC_Os02g03040.1 RRM 97 160
LOC_Os02g03040.2 RRM 4 65
LOC_Os02g03040.2 RRM 97 160
LOC_Os02g03040.3 RRM 3 35
LOC_Os02g03040.3 RRM 67 130
LOC_Os02g03040.4 RRM 1 32
LOC_Os02g03040.4 RRM 64 127

Links

Other RRM family RBPs
Other Oryza sativa RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa008562m Prunus persica ppa008562m N 0.789
mgf011722m Mimulus guttatus mgf011722m N 0.786
Glyma20g29460.1 Glycine max Glyma20g29460.1 N 0.762
Glyma16g02500.1 Glycine max Glyma16g02500.1 N 0.701
Glyma10g38400.1 Glycine max Glyma10g38400.1 N 0.762
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.701
Glyma03g01920.1 Glycine max Glyma03g01920.1 N 0.775
estExt_fgenesh1_pg.C_1440043 Physcomitrella patens estExt_fgenesh1_pg.C_1440043 N 0.730
e_gw1.5.1267.1 Selaginella moellendorfii e_gw1.5.1267.1 N 0.746
Cucsa.259460 Cucumis sativus Cucsa.259460 N 0.717
mgf013695m Mimulus guttatus mgf013695m N 0.797
mgf014243m Mimulus guttatus mgf014243m N 0.724
ppa005993m Prunus persica ppa005993m N 0.794
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.786
MDP0000583927 Malus x domestica MDP0000583927 N 0.789
MDP0000288452 Malus x domestica MDP0000288452 N 0.794
LjT39A22.50.nd Lotus japonicus LjT39A22.50.nd N 0.778
Medtr8g029490 Medicago truncatula Medtr8g029490 N 0.740
Medtr1g129430 Medicago truncatula Medtr1g129430 N 0.754
GRMZM2G121269 Zea mays GRMZM2G121269 N 0.781
mgf016209m Mimulus guttatus mgf016209m N 0.797
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.789
cassava31734.valid.m1 Manihot esculenta cassava31734.valid.m1 N 0.792
XM_002869624.1 Arabidopsis lyrata fgenesh2_kg.7__1711__AT4G25500.1 N 0.794
XM_002882032.1 Arabidopsis lyrata fgenesh2_kg.4__2884__AT2G46610.1 N 0.701
BRADI5G01430 Brachypodium distachyon BRADI5G01430 N 0.701
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.897
BGIOSIBCE013939 Oryza indica BGIOSIBCE013939 N 0.701
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 1.000
RS41 Arabidopsis thaliana AT5G52040-TAIR-G N 0.781
RS40 Arabidopsis thaliana AT4G25500-TAIR-G N 0.792
PK24775.1 Cannabis sativa PK24775.1 N 0.794
XM_002864102.1 Arabidopsis lyrata fgenesh2_kg.8__1091__AT5G52040.2 N 0.762
GSVIVG00010623001 Vitis vinifera GSVIVG00010623001 N 0.740
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.810
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.810
SB04G001910 Sorghum bicolor Sb04g001910 N 0.812
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.786
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.817
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.770
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.841
LOC_Os04g02870 Oryza sativa LOC_Os04g02870 N 0.701
PK11625.1 Cannabis sativa PK11625.1 N 0.742