estExt_Genewise1Plus.C_1660036 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_1660036 T51397_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.765
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.728
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.728
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.728
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.723
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.723
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_1660036 RRM 30 100
estExt_Genewise1Plus.C_1660036 RRM 116 185
estExt_Genewise1Plus.C_1660036 RRM 280 350

Links

Other RRM family RBPs
Other Capitella teleta RBPs

127 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ELAVL4 Homo sapiens ENSG00000162374 D 0.728
ELAVL2 Homo sapiens ENSG00000107105 D 0.723
Rbp9 Drosophila melanogaster FBgn0010263 D 0.783
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.723
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.704
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.728
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.709
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.728
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.713
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.728
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.723
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.712
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.723
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.728
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.709
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.709
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.723
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.728
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.714
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.716
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.728
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.728
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.728
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.723
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.728
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.723
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.723
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.709
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.723
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.709
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.728
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.723
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.728
GL26299 Drosophila persimilis FBgn0163881 I 0.788
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.709
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.728
AAA96943 Xenopus laevis AAA96943 I 0.715
AAA96944 Xenopus laevis AAA96944 I 0.701
AAA96945 Xenopus laevis AAA96945 I 0.728
AAH94189 Xenopus laevis AAH94189 I 0.718
AAH99348 Xenopus laevis AAH99348 I 0.728
AAI69769 Xenopus laevis AAI69769 I 0.701
AAI70539 Xenopus laevis AAI70539 I 0.718
CAA59430 Xenopus laevis CAA59430 I 0.710
CBF67567 Xenopus laevis CBF67567 I 0.728
CBU92440 Xenopus laevis CBU92440 I 0.728
Q91584 Xenopus laevis Q91584 I 0.701
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.723
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.759
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.797
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.728
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.728
GF14992 Drosophila ananassae FBgn0092017 I 0.770
GG24901 Drosophila erecta FBgn0117030 I 0.770
GH13638 Drosophila grimshawi FBgn0121114 I 0.788
GI11879 Drosophila mojavensis FBgn0134637 I 0.770
GM18380 Drosophila sechellia FBgn0173287 I 0.770
GJ13991 Drosophila virilis FBgn0201209 I 0.770
GK14865 Drosophila willistoni FBgn0216870 I 0.770
GE18193 Drosophila yakuba FBgn0235624 I 0.770
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.770
185541 Helobdella robusta 185541 I 0.731
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.732
Q91903 Xenopus laevis Q91903 I 0.715
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.751
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.728
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.728
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.723
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.736
elavl3 Danio rerio ENSDARG00000014420 I 0.723
elavl2 Danio rerio ENSDARG00000040732 I 0.723
elavl4 Danio rerio ENSDARG00000045639 I 0.726
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.728
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.709
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.723
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.728
ELAVL2 Equus caballus ENSECAG00000020142 I 0.723
LOC100051268 Equus caballus ENSECAG00000022284 I 0.728
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.723
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.728
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.709
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.765
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.821
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.816
AGAP000965 Anopheles gambiae AGAP000965 I 0.778
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.751
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.765
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.728
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.701
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.718
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.709
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.728
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.723
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.728
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.728
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.723
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.728
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.728
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.718
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.723
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.728
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.728
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.718
Elavl3 Mus musculus ENSMUSG00000003410 I 0.709
Elavl2 Mus musculus ENSMUSG00000008489 I 0.723
Elavl4 Mus musculus ENSMUSG00000028546 I 0.728
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.723
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.728
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.709
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.728
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.724
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.701
ELAVL3 Homo sapiens ENSG00000196361 I 0.709
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.728
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.723
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.709
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.728
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.714
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.728
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.723
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.709
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.728
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.709
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.723
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.728
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.723
187316 Helobdella robusta 187316 N 0.726