ENSCSAVG00000003440 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000003440 T35965_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.728
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.728
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.728
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.728
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.728
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.728
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.710
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000005766 RRM 1 62
ENSCSAVP00000005766 RRM 78 147
ENSCSAVP00000005766 RRM 238 308
ENSCSAVP00000005767 RRM 1 62
ENSCSAVP00000005767 RRM 78 147
ENSCSAVP00000005767 RRM 235 305
ENSCSAVP00000005768 RRM 90 160
ENSCSAVP00000005768 RRM 176 245
ENSCSAVP00000005769 RRM 41 111
ENSCSAVP00000005769 RRM 127 196
ENSCSAVP00000005769 RRM 285 355
ENSCSAVP00000005770 RRM 41 111
ENSCSAVP00000005770 RRM 127 196
ENSCSAVP00000005770 RRM 296 366
ENSCSAVP00000005771 RRM 22 92
ENSCSAVP00000005771 RRM 108 177
ENSCSAVP00000005771 RRM 277 347
ENSCSAVP00000005772 RRM 86 156
ENSCSAVP00000005772 RRM 172 241
ENSCSAVP00000005772 RRM 320 390
ENSCSAVP00000005773 RRM 7 77
ENSCSAVP00000005773 RRM 93 162
ENSCSAVP00000005773 RRM 242 312
ENSCSAVP00000005774 RRM 6 76
ENSCSAVP00000005774 RRM 92 161
ENSCSAVP00000005774 RRM 237 307
ENSCSAVP00000005775 RRM 21 64
ENSCSAVP00000005775 RRM 59 106
ENSCSAVP00000005775 RRM 122 191
ENSCSAVP00000005775 RRM 256 326

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000004712 Ciona intestinalis ENSCING00000004712 N 0.972
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.764
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.755
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.741
GH13638 Drosophila grimshawi FBgn0121114 I 0.736
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.736
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.732
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.732
GL26299 Drosophila persimilis FBgn0163881 I 0.731
AGAP000965 Anopheles gambiae AGAP000965 I 0.731
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.728
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.728
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.728
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.728
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.728
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.728
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.728
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.728
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.728
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.728
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.728
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.728
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.728
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.728
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.728
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.728
AAH99348 Xenopus laevis AAH99348 I 0.728
AAH94189 Xenopus laevis AAH94189 I 0.728
AAA96945 Xenopus laevis AAA96945 I 0.728
AAI70539 Xenopus laevis AAI70539 I 0.728
CBF67567 Xenopus laevis CBF67567 I 0.728
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.728
CBU92440 Xenopus laevis CBU92440 I 0.728
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.728
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.728
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.728
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.728
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.728
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.728
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.728
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.728
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.728
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.728
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.728
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.728
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.728
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.728
elavl2 Danio rerio ENSDARG00000040732 I 0.728
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.728
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.728
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.728
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.728
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.728
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.728
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.728
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.728
LOC100051268 Equus caballus ENSECAG00000022284 I 0.728
ELAVL2 Equus caballus ENSECAG00000020142 I 0.728
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.728
ELAVL2 Homo sapiens ENSG00000107105 D 0.728
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.728
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.728
ELAVL4 Homo sapiens ENSG00000162374 D 0.728
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.728
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.728
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.728
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.728
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.728
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.728
Elavl2 Mus musculus ENSMUSG00000008489 I 0.728
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.728
Elavl4 Mus musculus ENSMUSG00000028546 I 0.728
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.728
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.728
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.728
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.728
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.728
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.728
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.728
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.728
Rbp9 Drosophila melanogaster FBgn0010263 D 0.726
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.726
elavl4 Danio rerio ENSDARG00000045639 I 0.726
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.725
AAA96943 Xenopus laevis AAA96943 I 0.724
Q91903 Xenopus laevis Q91903 I 0.724
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.724
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.723
elavl3 Danio rerio ENSDARG00000014420 I 0.723
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.723
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.723
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.723
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.723
CAA59430 Xenopus laevis CAA59430 I 0.720
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.717
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.716
GG24901 Drosophila erecta FBgn0117030 I 0.714
GM18380 Drosophila sechellia FBgn0173287 I 0.714
GI11879 Drosophila mojavensis FBgn0134637 I 0.714
GF14992 Drosophila ananassae FBgn0092017 I 0.714
GJ13991 Drosophila virilis FBgn0201209 I 0.714
GK14865 Drosophila willistoni FBgn0216870 I 0.714
GE18193 Drosophila yakuba FBgn0235624 I 0.714
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.714
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.713
187316 Helobdella robusta 187316 N 0.712
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.710
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.709
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.706
AAA96944 Xenopus laevis AAA96944 I 0.706
AAI69769 Xenopus laevis AAI69769 I 0.706
Q91584 Xenopus laevis Q91584 I 0.706
hug Danio rerio ENSDARG00000016405 I 0.704
Elavl1 Mus musculus ENSMUSG00000040028 I 0.703
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.703
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.703
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.703
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.703
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.703
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.702