LOC100397507 (Callithrix jacchus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSCJAG00000004080 T02347_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.870
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.870
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000007474 CCCH ZF 17 41
ENSCJAP00000007474 CCCH ZF 58 73
ENSCJAP00000007474 CCCH ZF 174 200
ENSCJAP00000007474 CCCH ZF 211 234
ENSCJAP00000007484 CCCH ZF 8 23
ENSCJAP00000007484 CCCH ZF 124 150
ENSCJAP00000007484 CCCH ZF 161 184
ENSCJAP00000007493 CCCH ZF 78 104
ENSCJAP00000007493 CCCH ZF 115 138
ENSCJAP00000007777 CCCH ZF 8 23
ENSCJAP00000007777 CCCH ZF 124 150
ENSCJAP00000007777 CCCH ZF 161 184
ENSCJAP00000043903 CCCH ZF 17 41
ENSCJAP00000043903 CCCH ZF 58 73
ENSCJAP00000043903 CCCH ZF 174 200
ENSCJAP00000043903 CCCH ZF 211 234
ENSCJAP00000046809 CCCH ZF 17 41
ENSCJAP00000046809 CCCH ZF 58 73
ENSCJAP00000046809 CCCH ZF 174 200
ENSCJAP00000046809 CCCH ZF 211 234
ENSCJAP00000048390 CCCH ZF 78 104
ENSCJAP00000048390 CCCH ZF 115 138

Links

Other CCCH ZF family RBPs
Other Callithrix jacchus RBPs

133 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A3F958_CHICK Gallus gallus ENSGALG00000016890 I 0.870
A5HMN7_CHICK Gallus gallus ENSGALG00000006066 I 0.961
A5PJM0_BOVIN Bos taurus ENSBTAG00000004564 N 0.896
A5PKK4_BOVIN Bos taurus ENSBTAG00000018313 I 0.859
Ame_R002664 Ailuropoda melanoleuca Ame_R002664 I 0.859
Ame_R004201 Ailuropoda melanoleuca Ame_R004201 N 0.866
Ame_R011226 Ailuropoda melanoleuca Ame_R011226 I 0.946
ENSGACG00000004222 Gasterosteus aculeatus ENSGACG00000004222 I 0.837
ENSGACG00000015105 Gasterosteus aculeatus ENSGACG00000015105 I 0.870
ENSORLG00000005419 Oryzias latipes ENSORLG00000005419 I 0.870
ENSPPYG00000005456 Pongo pygmaeus ENSPPYG00000005456 I 0.859
ENSPPYG00000014218 Pongo pygmaeus ENSPPYG00000014218 I 0.870
ENSPPYG00000020726 Pongo pygmaeus ENSPPYG00000020726 I 0.989
ENSTNIG00000013977 Tetraodon nigroviridis ENSTNIG00000013977 I 0.837
ENSTRUG00000017351 Takifugu rubripes ENSTRUG00000017351 I 0.848
fgenesh2_pg.scaffold_81000033 Branchiostoma floridae fgenesh2_pg.scaffold_81000033 N 0.902
fgenesh2_pg.scaffold_93000116 Branchiostoma floridae fgenesh2_pg.scaffold_93000116 N 0.902
LOC100050018 Equus caballus ENSECAG00000024349 I 0.870
LOC100054316 Equus caballus ENSECAG00000021076 I 0.978
LOC100392264 Callithrix jacchus ENSCJAG00000001054 I 0.896
LOC100403733 Callithrix jacchus ENSCJAG00000004294 I 0.859
MBN2A_FUGRU Takifugu rubripes ENSTRUG00000010220 I 0.870
MBNL1 Macaca mulatta ENSMMUG00000015910 I 0.870
MBNL1 Loxodonta africana ENSLAFG00000017683 I 0.870
MBNL1 Sus scrofa ENSSSCG00000011720 N 0.866
MBNL1 Spermophilus tridecemlineatus ENSSTOG00000009457 I 0.870
MBNL1 Gorilla gorilla ENSGGOG00000009430 I 0.870
MBNL1 Oryctolagus cuniculus ENSOCUG00000007601 I 0.870
MBNL1 Meleagris gallopavo ENSMGAG00000010862 N 0.866
MBNL1 Oryzias latipes ENSORLG00000005925 I 0.880
MBNL1 Procavia capensis ENSPCAG00000002143 N 0.866
MBNL1 Myotis lucifugus ENSMLUG00000014029 I 0.859
Mbnl1 Mus musculus ENSMUSG00000027763 I 0.870
MBNL1 Oryzias latipes ENSORLG00000015858 I 0.848
MBNL1 Ornithorhynchus anatinus ENSOANG00000007992 I 0.708
MBNL1 Pan troglodytes ENSPTRG00000015542 I 0.870
MBNL1 Pteropus vampyrus ENSPVAG00000002760 I 0.870
MBNL1 Monodelphis domestica ENSMODG00000015838 I 0.882
MBNL1 Ochotona princeps ENSOPRG00000009633 I 0.870
MBNL1 Takifugu rubripes ENSTRUG00000013858 I 0.859
MBNL1 Vicugna pacos ENSVPAG00000006162 I 0.870
MBNL1 Felis catus ENSFCAG00000002293 N 0.866
MBNL1 Takifugu rubripes ENSTRUG00000001892 I 0.870
MBNL1 Erinaceus europaeus ENSEEUG00000009449 I 0.870
MBNL1 Cavia porcellus ENSCPOG00000011516 I 0.870
MBNL1 Tarsius syrichta ENSTSYG00000010491 I 0.870
MBNL1 Macropus eugenii ENSMEUG00000006617 I 0.848
MBNL1 Tursiops truncatus ENSTTRG00000009991 I 0.870
mbnl1 Danio rerio ENSDARG00000052978 N 0.843
MBNL1 Tetraodon nigroviridis ENSTNIG00000007695 N 0.866
mbnl1 Xenopus tropicalis ENSXETG00000021655 I 0.859
MBNL1 Gasterosteus aculeatus ENSGACG00000015003 I 0.859
MBNL1 Anolis carolinensis ENSACAG00000008014 I 0.870
MBNL1 Canis familiaris ENSCAFG00000008603 I 0.870
MBNL1 Gasterosteus aculeatus ENSGACG00000010253 I 0.848
MBNL1 Homo sapiens ENSG00000152601 D 0.882
MBNL1 Taeniopygia guttata ENSTGUG00000011341 I 0.870
MBNL1 Tetraodon nigroviridis ENSTNIG00000003878 I 0.859
MBNL1 Dasypus novemcinctus ENSDNOG00000012815 I 0.870
MBNL1_CHICK Gallus gallus ENSGALG00000010361 I 0.870
MBNL2 Vicugna pacos ENSVPAG00000010696 I 0.859
MBNL2 Pteropus vampyrus ENSPVAG00000003263 I 0.859
MBNL2 Procavia capensis ENSPCAG00000005151 I 0.859
MBNL2 Tupaia belangeri ENSTBEG00000005178 I 0.815
MBNL2 Spermophilus tridecemlineatus ENSSTOG00000013149 I 0.859
MBNL2 Sus scrofa ENSSSCG00000009505 I 0.859
MBNL2 Sorex araneus ENSSARG00000002868 I 0.859
Mbnl2 Rattus norvegicus ENSRNOG00000010737 I 0.848
MBNL2 Taeniopygia guttata ENSTGUG00000011104 I 0.870
MBNL2 Pan troglodytes ENSPTRG00000005982 I 0.859
MBNL2 Tursiops truncatus ENSTTRG00000008491 I 0.859
MBNL2 Ochotona princeps ENSOPRG00000007427 I 0.859
MBNL2 Anolis carolinensis ENSACAG00000000969 I 0.870
MBNL2 Cavia porcellus ENSCPOG00000010320 I 0.859
MBNL2 Meleagris gallopavo ENSMGAG00000014904 I 0.870
MBNL2 Homo sapiens ENSG00000139793 I 0.859
mbnl2 Danio rerio ENSDARG00000018460 I 0.870
MBNL2 Macropus eugenii ENSMEUG00000016143 I 0.815
MBNL2 Loxodonta africana ENSLAFG00000014497 I 0.859
MBNL2 Equus caballus ENSECAG00000020574 N 0.863
MBNL2 Erinaceus europaeus ENSEEUG00000006209 I 0.837
MBNL2 Gorilla gorilla ENSGGOG00000008349 I 0.859
MBNL2 Echinops telfairi ENSETEG00000003784 I 0.859
MBNL2 Felis catus ENSFCAG00000005148 N 0.851
MBNL2 Myotis lucifugus ENSMLUG00000010920 I 0.793
MBNL2 Tarsius syrichta ENSTSYG00000004574 I 0.848
MBNL2 Oryctolagus cuniculus ENSOCUG00000000220 I 0.866
Mbnl2 Mus musculus ENSMUSG00000022139 I 0.848
MBNL2 Monodelphis domestica ENSMODG00000008566 I 0.859
MBNL2 Choloepus hoffmanni ENSCHOG00000000049 I 0.848
MBNL2 Ornithorhynchus anatinus ENSOANG00000014911 I 0.859
MBNL2 Canis familiaris ENSCAFG00000005523 I 0.866
MBNL3 Bos taurus ENSBTAG00000014088 I 0.978
MBNL3 Erinaceus europaeus ENSEEUG00000013021 N 0.711
MBNL3 Anolis carolinensis ENSACAG00000009557 I 0.924
MBNL3 Tetraodon nigroviridis ENSTNIG00000016812 I 0.891
MBNL3 Echinops telfairi ENSETEG00000015907 N 0.750
MBNL3 Cavia porcellus ENSCPOG00000008092 N 0.940
mbnl3 Danio rerio ENSDARG00000016085 I 0.870
Mbnl3 Dipodomys ordii ENSDORG00000012854 I 0.913
MBNL3 Tarsius syrichta ENSTSYG00000014189 N 0.910
MBNL3 Dasypus novemcinctus ENSDNOG00000016518 I 0.957
MBNL3 Canis familiaris ENSCAFG00000018841 I 0.978
MBNL3 Vicugna pacos ENSVPAG00000004743 I 0.978
mbnl3 Xenopus tropicalis ENSXETG00000005409 I 0.935
MBNL3 Tursiops truncatus ENSTTRG00000016841 I 0.967
MBNL3 Homo sapiens ENSG00000076770 I 1.000
MBNL3 Gasterosteus aculeatus ENSGACG00000017015 I 0.880
MBNL3 Pteropus vampyrus ENSPVAG00000006115 I 0.884
MBNL3 Microcebus murinus ENSMICG00000017340 I 0.935
MBNL3 Myotis lucifugus ENSMLUG00000016240 I 0.978
MBNL3 Macaca mulatta ENSMMUG00000003071 I 1.000
Mbnl3 Mus musculus ENSMUSG00000036109 I 0.924
MBNL3 Procavia capensis ENSPCAG00000014188 N 0.940
MBNL3 Monodelphis domestica ENSMODG00000015304 I 0.940
MBNL3 Ornithorhynchus anatinus ENSOANG00000011697 I 0.940
MBNL3 Oryzias latipes ENSORLG00000002183 I 0.859
MBNL3 Oryctolagus cuniculus ENSOCUG00000014979 I 0.978
Mbnl3 Rattus norvegicus ENSRNOG00000002487 I 0.866
MBNL3 Meleagris gallopavo ENSMGAG00000003064 I 0.935
MBNL3 Taeniopygia guttata ENSTGUG00000002999 I 0.935
MBNL3 Tupaia belangeri ENSTBEG00000008063 N 0.955
MBNL3 Gorilla gorilla ENSGGOG00000007756 I 0.989
MBNL3 Loxodonta africana ENSLAFG00000011822 I 0.989
MBNL3 Spermophilus tridecemlineatus ENSSTOG00000006715 I 0.978
MBNL3 Sus scrofa ENSSSCG00000012676 N 0.955
MBNL3 Macropus eugenii ENSMEUG00000001183 I 0.935
MBNL3 Sorex araneus ENSSARG00000006397 I 0.967
MBNL3_FUGRU Takifugu rubripes ENSTRUG00000012666 I 0.891
Q8CIQ0_RAT Rattus norvegicus ENSRNOG00000014076 N 0.866
XP_001194015.1 Strongylocentrotus purpuratus XP_001194015.1 I 0.774
XR_020327.1 Pan troglodytes ENSPTRG00000022280 N 0.980