GSVIVG00032633001 (Vitis vinifera)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		GSVIVG00032633001 T07386_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00032633001 RRM 45 107
GSVIVT00032633001 CCHC ZF 134 151
GSVIVT00032633001 CCHC ZF 156 173

Links

Other CCHC ZF,RRM family RBPs
Other Vitis vinifera RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29805.m001527 Ricinus communis 29805.m001527 N 0.889
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.869
AC235022_4 Medicago truncatula AC235022_4 N 0.889
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.899
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.879
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.869
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.848
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.899
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.838
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.859
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.899
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.899
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.859
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.899
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.889
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.899
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.889
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.899
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.818
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.798
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.838
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.818
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.899
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.838
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.869
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.859
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.848
mgf009930m Mimulus guttatus mgf009930m N 0.889
PK26144.1 Cannabis sativa PK26144.1 N 0.919
ppa009074m Prunus persica ppa009074m N 0.939
ppa009294m Prunus persica ppa009294m N 0.899
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.879
SB03G005500 Sorghum bicolor Sb03g005500 N 0.859
SB09G001910 Sorghum bicolor Sb09g001910 N 0.828
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.828
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.899