CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Sb09g001920
(
Sorghum bicolor
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
Sb09g001920
T07432_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb09g001920.1
RRM
13
75
LYVGRLAPRTRSRDLEYLFSKYGRIREVELKRDYAFIEFSDPHDADDAQYNLDGREVDGSRII
Sb09g001920.1
CCHC ZF
102
119
GRCFNCGIDGHWARDCKA
Sb09g001920.1
CCHC ZF
124
141
NKCYRCGERGHIERNCQN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Sorghum bicolor
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os04g21090
Oryza sativa
LOC_Os04g21090
N
0.000
LOC_Os05g18310
Oryza sativa
LOC_Os05g18310
N
0.000
LOC_Os05g27260
Oryza sativa
LOC_Os05g27260
N
0.000
LOC_Os05g51890
Oryza sativa
LOC_Os05g51890
N
0.000
LOC_Os09g17170
Oryza sativa
LOC_Os09g17170
N
0.000
LOC_Os10g14860
Oryza sativa
LOC_Os10g14860
N
0.000