CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mgf009930m
(
Mimulus guttatus
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
mgf009930m
T07596_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf009930m
RRM
14
76
LYVGHLSSRTRSRDLEHVFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYSMDGRDVDGRRII
mgf009930m
CCHC ZF
105
122
GRCFNCGLDGHWARDCKA
mgf009930m
CCHC ZF
127
144
NKCYRCGERGHIERSCQN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Mimulus guttatus
RBPs
37 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R011358
Ailuropoda melanoleuca
Ame_R011358
N
0.000
ENSMLUG00000002995
Myotis lucifugus
ENSMLUG00000002995
N
0.000
ENSMLUG00000010841
Myotis lucifugus
ENSMLUG00000010841
N
0.000
ENSOCUG00000026069
Oryctolagus cuniculus
ENSOCUG00000026069
N
0.000
ENSPPYG00000010167
Pongo pygmaeus
ENSPPYG00000010167
N
0.000
LOC678741
Rattus norvegicus
ENSRNOG00000015229
N
0.000
ZC3H4
Ornithorhynchus anatinus
ENSOANG00000001794
N
0.000
ZC3H4
Otolemur garnettii
ENSOGAG00000012833
N
0.000
ZC3H4
Ochotona princeps
ENSOPRG00000014889
N
0.000
ZC3H4
Pan troglodytes
ENSPTRG00000011201
N
0.000
ZC3H4
Pteropus vampyrus
ENSPVAG00000005687
N
0.000
ZC3H4
Sorex araneus
ENSSARG00000014146
N
0.000
ZC3H4
Sus scrofa
ENSSSCG00000003110
N
0.000
ZC3H4
Spermophilus tridecemlineatus
ENSSTOG00000016249
N
0.000
ZC3H4
Tetraodon nigroviridis
ENSTNIG00000013432
N
0.000
ZC3H4
Takifugu rubripes
ENSTRUG00000007843
N
0.000
ZC3H4
Tarsius syrichta
ENSTSYG00000000926
N
0.000
Zc3h4
Mus musculus
ENSMUSG00000059273
N
0.000
ZC3H4
Monodelphis domestica
ENSMODG00000008978
N
0.000
ZC3H4
Macaca mulatta
ENSMMUG00000014709
N
0.000
ZC3H4
Bos taurus
ENSBTAG00000009286
N
0.000
ZC3H4
Canis familiaris
ENSCAFG00000004182
N
0.000
ZC3H4
Callithrix jacchus
ENSCJAG00000011601
N
0.000
ZC3H4
Cavia porcellus
ENSCPOG00000012610
N
0.000
ZC3H4
Danio rerio
ENSDARG00000078355
N
0.000
ZC3H4
Dasypus novemcinctus
ENSDNOG00000003764
N
0.000
Zc3h4
Dipodomys ordii
ENSDORG00000002726
N
0.000
ZC3H4
Equus caballus
ENSECAG00000024342
N
0.000
ZC3H4
Echinops telfairi
ENSETEG00000005763
N
0.000
ZC3H4
Homo sapiens
ENSG00000130749
N
0.000
ZC3H4
Gasterosteus aculeatus
ENSGACG00000012374
N
0.000
ZC3H4
Gorilla gorilla
ENSGGOG00000013071
N
0.000
ZC3H4
Loxodonta africana
ENSLAFG00000001586
N
0.000
ZC3H4
Microcebus murinus
ENSMICG00000008786
N
0.000
ZC3H4
Anolis carolinensis
ENSACAG00000003986
N
0.000