YBOX1_RABIT (Oryctolagus cuniculus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSOCUG00000028047 T16948_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.732
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000019994 CSD 1 52

Links

Other CSD family RBPs
Other Oryctolagus cuniculus RBPs

122 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.704
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.732
AAA49715 Xenopus laevis AAA49715 I 0.732
AAA49716 Xenopus laevis AAA49716 I 0.718
AAA49924 Xenopus laevis AAA49924 I 0.704
AAEL001375 Aedes aegypti AAEL001375 I 0.000
AAH41191 Xenopus laevis AAH41191 I 0.732
AAH42217 Xenopus laevis AAH42217 I 0.732
AAI06324 Xenopus laevis AAI06324 I 0.732
AAI30161 Xenopus laevis AAI30161 I 0.732
AAI55914 Xenopus laevis AAI55914 I 0.704
AAI55915 Xenopus laevis AAI55915 I 0.718
AAI69704 Xenopus laevis AAI69704 I 0.718
AGAP006108 Anopheles gambiae AGAP006108 I 0.000
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.000
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.000
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.000
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.000
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.000
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.000
Bm1_57515 Brugia malayi Bm1_57515 I 0.000
CAA42778 Xenopus laevis CAA42778 I 0.732
CBN16711 Caenorhabditis brenneri CBN16711 I 0.000
cey-1 Caenorhabditis elegans F33A8.3 I 0.000
CRE01789 Caenorhabditis remanei CRE01789 I 0.000
CSDA Loxodonta africana ENSLAFG00000017247 I 0.743
CSDA Homo sapiens ENSG00000060138 I 0.732
CSDA Echinops telfairi ENSETEG00000002557 I 0.732
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.732
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.963
csda Xenopus tropicalis ENSXETG00000016239 I 0.704
CSDA Procavia capensis ENSPCAG00000001397 I 0.000
Csda Rattus norvegicus ENSRNOG00000005480 I 0.732
CSDA Sus scrofa ENSSSCG00000000633 I 0.732
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.000
Csda Mus musculus ENSMUSG00000030189 I 0.732
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.732
CSDA Monodelphis domestica ENSMODG00000018248 I 0.718
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.732
CSDA Macaca mulatta ENSMMUG00000022469 I 0.732
CSDA Pan troglodytes ENSPTRG00000004681 I 0.732
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.732
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.732
CSDA Cavia porcellus ENSCPOG00000011329 I 0.732
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.732
Csda Dipodomys ordii ENSDORG00000009103 I 0.732
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.000
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.704
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.000
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.732
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.000
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.000
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.000
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.718
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.000
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.000
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.718
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.000
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.000
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.732
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.000
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.732
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.718
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.732
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.704
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.000
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.732
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.769
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.000
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.704
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.732
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.718
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.000
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.732
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.732
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.729
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.718
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.000
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.000
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.000
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.732
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.000
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.000
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.000
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.000
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.000
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.000
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.000
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.000
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.000
GD12750 Drosophila simulans FBgn0184477 I 0.000
GE20150 Drosophila yakuba FBgn0237472 I 0.000
GF10852 Drosophila ananassae FBgn0087892 I 0.000
GH16919 Drosophila grimshawi FBgn0124390 I 0.000
GI13673 Drosophila mojavensis FBgn0136428 I 0.000
GJ14010 Drosophila virilis FBgn0201228 I 0.000
GK16710 Drosophila willistoni FBgn0218712 I 0.000
GL15684 Drosophila persimilis FBgn0153288 I 0.000
GM24682 Drosophila sechellia FBgn0179545 I 0.000
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.000
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.000
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.000
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.000
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.000
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.000
ISCW005281 Ixodes scapularis ISCW005281 I 0.000
LOC100065107 Equus caballus ENSECAG00000013777 I 0.732
LOC100067336 Equus caballus ENSECAG00000023592 I 0.732
LOC100072964 Equus caballus ENSECAG00000009996 I 0.704
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.732
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.732
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.704
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.000
P21573 Xenopus laevis P21573 I 0.732
P21574 Xenopus laevis P21574 I 0.718
P45441 Xenopus laevis P45441 I 0.704
PHUM156710 Pediculus humanus PHUM156710 I 0.000
PHUM156720 Pediculus humanus PHUM156720 I 0.000
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.000
Q00436 Xenopus laevis Q00436 I 0.732
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.000
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.732
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.000
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.732
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.732
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.000
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.000
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.000
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.000
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.000
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.000
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.000
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.732
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.732
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.000
YB-1 Homo sapiens ENSG00000065978 D 0.962
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.732
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.800
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.732
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.000
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.732
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.732
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.000
ybx1 Danio rerio ENSDARG00000004757 I 0.732
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.788
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.754
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.812
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.732
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.732
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.732
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.732
YBX1 Microcebus murinus ENSMICG00000014984 I 0.732
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.732
Ybx1 Mus musculus ENSMUSG00000028639 I 0.732
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.732
YBX2 Canis familiaris ENSCAFG00000016128 I 0.704
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.704
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.909
YBX2 Sorex araneus ENSSARG00000000488 I 0.000
YBX2 Sus scrofa ENSSSCG00000017938 I 0.704
YBX2 Procavia capensis ENSPCAG00000008019 I 0.704
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.750
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.704
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.704
YBX2 Homo sapiens ENSG00000006047 D 0.000
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.000
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.704
Ybx2 Mus musculus ENSMUSG00000018554 I 0.704
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.000
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.704
ybx2-a Xenopus laevis AAI69706 D 0.718
yps Drosophila melanogaster FBgn0022959 I 0.000