amel4_ncbi_hmm2520 (Apis mellifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 amel4_ncbi_hmm2520 T31891_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.789
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.732
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm2520 RRM 225 295

Links

Other RRM family RBPs
Other Apis mellifera RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
76581 Helobdella robusta 76581 I 0.761
A2VDB3 Xenopus laevis A2VDB3 I 0.718
AAEL010642 Aedes aegypti AAEL010642 I 0.817
AAI29577 Xenopus laevis AAI29577 I 0.704
AAI29698 Xenopus laevis AAI29698 I 0.718
AGAP010200 Anopheles gambiae AGAP010200 I 0.831
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.732
Aqu1.218430 Amphimedon queenslandica Aqu1.218430 I 0.718
BGIBMGA005213 Bombyx mori BGIBMGA005213 I 0.845
CG2931 Drosophila melanogaster FBgn0037342 D 0.789
DGIL_AUG5s15230g22t1 Acyrtosiphon pisum DGIL_AUG5s15230g22t1 I 0.817
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.732
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.732
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.732
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.789
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.789
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.789
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.746
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.718
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.845
GA15528-RA Drosophila pseudoobscura FBgn0075545 I 0.775
GD19605 Drosophila simulans FBgn0191097 I 0.775
GE24162 Drosophila yakuba FBgn0241294 I 0.789
GF11626 Drosophila ananassae FBgn0088666 I 0.789
GG10948 Drosophila erecta FBgn0103251 I 0.775
GH22277 Drosophila grimshawi FBgn0129737 I 0.775
GI23084 Drosophila mojavensis FBgn0145811 I 0.803
GJ22705 Drosophila virilis FBgn0209809 I 0.775
GK12952 Drosophila willistoni FBgn0214961 I 0.775
GL22151 Drosophila persimilis FBgn0159743 I 0.775
GM10617 Drosophila sechellia FBgn0165563 I 0.789
LOC100051102 Equus caballus ENSECAG00000018215 I 0.732
Minc13155 Meloidogyne incognita Minc13155 I 0.746
nasonia_NCBI_hmm320104 Nasonia vitripennis nasonia_NCBI_hmm320104 N 0.887
PHUM106890 Pediculus humanus PHUM106890 I 0.915
PTSG_04228 Salpingoeca rosetta PTSG_04228 I 0.704
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.732
RBM42 Canis familiaris ENSCAFG00000006925 I 0.732
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.732
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.732
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.732
RBM42 Microcebus murinus ENSMICG00000009880 I 0.732
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.732
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.761
RBM42 Homo sapiens ENSG00000126254 D 0.732
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.732
rbm42 Danio rerio ENSDARG00000039910 I 0.775
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.732
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.732
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.746
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.732
Rbm42 Mus musculus ENSMUSG00000036733 I 0.732
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.732
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.761
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.761
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.732
RBM42 Sus scrofa ENSSSCG00000002905 I 0.732
RBM42 Sorex araneus ENSSARG00000010724 I 0.732
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.732
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.732
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.732
RBM42 Procavia capensis ENSPCAG00000013053 I 0.732
RBM42 Oryzias latipes ENSORLG00000003387 I 0.761
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.732
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.732
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.761
XP_002167334.1 Hydra magnipapillata XP_002167334.1 I 0.718