CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPSF7
(
Gallus gallus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGALG00000013298
T37706_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000021677
RRM
84
156
VYVGSFSWWTTDQQLIQTIRSVGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGDKVE
Links
Other
RRM
family RBPs
Other
Gallus gallus
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL002980
Aedes aegypti
AAEL002980
I
0.000
AAEL014167
Aedes aegypti
AAEL014167
I
0.000
AGAP011637
Anopheles gambiae
AGAP011637
I
0.000
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.000
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.000
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.000
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.000
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.000
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.000
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.000
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.000
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.000
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.000
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.000
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.000
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.000
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.000
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.000
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.000
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.000
GE16390
Drosophila yakuba
FBgn0233919
I
0.000
GF21334
Drosophila ananassae
FBgn0098336
I
0.000
GG18748
Drosophila erecta
FBgn0110957
I
0.000
GH24608
Drosophila grimshawi
FBgn0132064
I
0.000
GJ16850
Drosophila virilis
FBgn0204029
I
0.000
GK25839
Drosophila willistoni
FBgn0227798
I
0.000
GL14287
Drosophila persimilis
FBgn0151892
I
0.000
GM12396
Drosophila sechellia
FBgn0167333
I
0.000
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.000
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.000
snf
Drosophila mojavensis
FBgn0069598
I
0.000
snf
Drosophila melanogaster
FBgn0003449
D
0.000
SNRPA
Homo sapiens
ENSG00000077312
D
0.000
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.000
SNRPA
Felis catus
ENSFCAG00000016209
I
0.000
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.000
snrpa
Danio rerio
ENSDARG00000018890
I
0.000
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.000
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.000
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.000
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.000
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.000
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.000
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.000
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.000
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.000
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.000
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.000
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.000
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.000
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.000
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.000
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.000
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.000
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.000
XP_789234.2
Strongylocentrotus purpuratus
XP_789234.2
I
0.000