SNRPB2 (Macropus eugenii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMEUG00000016552 T38295_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.712
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.705
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.705
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.705
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.705
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.705
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.705
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.705
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMEUP00000015121 RRM 2 58
ENSMEUP00000015121 RRM 130 196

Links

Other RRM family RBPs
Other Macropus eugenii RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.952
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.892
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.892
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.892
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.892
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.892
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.892
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.892
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.892
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.892
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.892
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.892
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.892
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.892
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.892
LOC100050830 Equus caballus ENSECAG00000018407 I 0.892
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.892
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.892
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.892
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.892
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.892
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.892
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.892
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.892
SNRPB2 Homo sapiens ENSG00000125870 I 0.892
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.892
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.885
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.885
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.885
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.878
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.878
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.878
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.871
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.871
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.856
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.849
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.849
AAH72799 Xenopus laevis AAH72799 I 0.842
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.835
AAH84107 Xenopus laevis AAH84107 I 0.813
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.799
ENSTGUG00000014863 Taeniopygia guttata ENSTGUG00000014863 N 0.798
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.790
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.778
ENSTGUG00000016665 Taeniopygia guttata ENSTGUG00000016665 N 0.758
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.748
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.748
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.742
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.742
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.741
snrpb2 Danio rerio ENSDARG00000039424 I 0.741
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.734
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.734
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.734
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.734
SNRPB2 Dasypus novemcinctus ENSDNOG00000014137 N 0.734
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.727
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.727
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.727
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.727
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.727
AAEL002980 Aedes aegypti AAEL002980 I 0.719
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.719
AAEL014167 Aedes aegypti AAEL014167 I 0.719
GH24608 Drosophila grimshawi FBgn0132064 I 0.719
snf Drosophila mojavensis FBgn0069598 I 0.719
GJ16850 Drosophila virilis FBgn0204029 I 0.719
GK25839 Drosophila willistoni FBgn0227798 I 0.719
SNRPA Procavia capensis ENSPCAG00000012325 I 0.712
snf Drosophila melanogaster FBgn0003449 D 0.712
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.712
Snrpa Mus musculus ENSMUSG00000061479 I 0.712
GF21334 Drosophila ananassae FBgn0098336 I 0.712
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.712
GM12396 Drosophila sechellia FBgn0167333 I 0.712
GG18748 Drosophila erecta FBgn0110957 I 0.712
GE16390 Drosophila yakuba FBgn0233919 I 0.712
AGAP011637 Anopheles gambiae AGAP011637 I 0.712
GL14287 Drosophila persimilis FBgn0151892 I 0.712
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.712
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.705
SNRPA Felis catus ENSFCAG00000016209 I 0.705
SNRPA Homo sapiens ENSG00000077312 D 0.705
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.705
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.705
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.705
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.705
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.705
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.705
SNRPA Sus scrofa ENSSSCG00000002998 I 0.705
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.705
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.705
SNRPA Canis familiaris ENSCAFG00000005091 I 0.705
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.705
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.705
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.705
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.705
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.705
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.705
LOC100068274 Equus caballus ENSECAG00000013141 I 0.705