CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_789234.2
(
Strongylocentrotus purpuratus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
XP_789234.2
T59251_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.719
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.712
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.712
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.712
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.712
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.712
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.712
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.712
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.712
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_789234.2
RRM
2
58
KKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFRDITSATSALRSMQGFPFYDKPMR
XP_789234.2
RRM
159
225
LFLTNLPEETNELMLEVLFKQFNGYKEVRLVPGRHDIAFVEFANEQQSGTAKDALQGFKITPTNTLK
Links
Other
RRM
family RBPs
Other
Strongylocentrotus purpuratus
RBPs
56 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XP_001202981.1
Strongylocentrotus purpuratus
XP_001202981.1
I
1.000
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.798
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.786
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.755
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.755
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.748
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.742
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.741
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.741
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.741
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.734
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.734
snf
Drosophila mojavensis
FBgn0069598
I
0.727
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.727
GH24608
Drosophila grimshawi
FBgn0132064
I
0.727
GJ16850
Drosophila virilis
FBgn0204029
I
0.727
GK25839
Drosophila willistoni
FBgn0227798
I
0.727
AAEL014167
Aedes aegypti
AAEL014167
I
0.727
AAEL002980
Aedes aegypti
AAEL002980
I
0.727
snf
Drosophila melanogaster
FBgn0003449
D
0.719
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.719
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.719
GF21334
Drosophila ananassae
FBgn0098336
I
0.719
GG18748
Drosophila erecta
FBgn0110957
I
0.719
GE16390
Drosophila yakuba
FBgn0233919
I
0.719
GM12396
Drosophila sechellia
FBgn0167333
I
0.719
GL14287
Drosophila persimilis
FBgn0151892
I
0.719
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.719
AGAP011637
Anopheles gambiae
AGAP011637
I
0.719
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.719
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.718
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.712
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.712
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.712
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.712
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.712
SNRPA
Felis catus
ENSFCAG00000016209
I
0.712
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.712
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.712
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.712
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.712
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.712
SNRPA
Homo sapiens
ENSG00000077312
D
0.712
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.712
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.712
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.712
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.712
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.712
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.712
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.712
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.712
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.712
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.712
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.705
snrpa
Danio rerio
ENSDARG00000018890
I
0.705
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.701