CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSTGUG00000016203
(
Taeniopygia guttata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTGUG00000016203
T41984_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.710
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000016522
RRM
3
59
KRSLYVLFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMH
ENSTGUP00000016522
RRM
134
199
LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENENQAGAARDALQGFKIPPSHAM
Links
Other
RRM
family RBPs
Other
Taeniopygia guttata
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.952
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.863
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.856
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.856
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.849
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.849
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.849
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.849
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.849
SNRPB2
Homo sapiens
ENSG00000125870
I
0.849
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.849
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.849
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.849
SNRPB2
Oryctolagus cuniculus
ENSOCUG00000001427
I
0.849
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.849
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.849
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.849
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.849
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.849
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.849
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.849
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.849
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.849
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.849
SNRPB2
Procavia capensis
ENSPCAG00000003156
I
0.849
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.849
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.849
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.849
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.849
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.849
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.849
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.842
SNRPB2
Anolis carolinensis
ENSACAG00000000582
I
0.842
SNRPB2
Monodelphis domestica
ENSMODG00000005392
I
0.827
snrpb2
Xenopus tropicalis
ENSXETG00000003550
I
0.827
LOC100407601
Callithrix jacchus
ENSCJAG00000023308
I
0.826
SNRPB2
Pteropus vampyrus
ENSPVAG00000016140
I
0.820
AAH72799
Xenopus laevis
AAH72799
I
0.820
ENSTGUG00000014863
Taeniopygia guttata
ENSTGUG00000014863
N
0.806
SNRPB2
Echinops telfairi
ENSETEG00000001085
I
0.804
AAH84107
Xenopus laevis
AAH84107
I
0.804
ENSTGUG00000016665
Taeniopygia guttata
ENSTGUG00000016665
N
0.797
LOC100394904
Callithrix jacchus
ENSCJAG00000022477
I
0.783
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.780
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.768
snrpb2
Danio rerio
ENSDARG00000039424
I
0.732
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.727
SNRPB2
Tetraodon nigroviridis
ENSTNIG00000002735
I
0.725
SNRPB2
Gasterosteus aculeatus
ENSGACG00000019682
I
0.725
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.725
XP_789234.2
Strongylocentrotus purpuratus
XP_789234.2
I
0.718
XP_001202981.1
Strongylocentrotus purpuratus
XP_001202981.1
I
0.718
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.717
SNRPB2
Takifugu rubripes
ENSTRUG00000009060
I
0.717
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.717
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.717
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.717
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.717
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.712
snf
Drosophila mojavensis
FBgn0069598
I
0.710
SNRPB2
Oryzias latipes
ENSORLG00000019421
I
0.710
AAEL002980
Aedes aegypti
AAEL002980
I
0.710
snf
Drosophila melanogaster
FBgn0003449
D
0.710
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.710
GM12396
Drosophila sechellia
FBgn0167333
I
0.710
GK25839
Drosophila willistoni
FBgn0227798
I
0.710
AAEL014167
Aedes aegypti
AAEL014167
I
0.710
GJ16850
Drosophila virilis
FBgn0204029
I
0.710
GH24608
Drosophila grimshawi
FBgn0132064
I
0.710
GG18748
Drosophila erecta
FBgn0110957
I
0.710
GE16390
Drosophila yakuba
FBgn0233919
I
0.710
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.703
GF21334
Drosophila ananassae
FBgn0098336
I
0.703
GL14287
Drosophila persimilis
FBgn0151892
I
0.703
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.703
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.703
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.703
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.703
AGAP011637
Anopheles gambiae
AGAP011637
I
0.703