SYNCRIP (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000014840 T40225_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.881
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.856
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.832
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000018606 RRM 164 233
ENSORLP00000018606 RRM 245 312
ENSORLP00000018606 RRM 340 402
ENSORLP00000018607 RRM 192 261
ENSORLP00000018607 RRM 273 340
ENSORLP00000018607 RRM 368 430

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.823
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.896
AAH70529 Xenopus laevis AAH70529 I 0.881
AAI61702 Xenopus laevis AAI61702 I 0.842
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.823
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.896
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.729
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.823
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.823
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.823
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.896
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.847
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.881
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.801
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.816
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.823
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.823
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.812
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.818
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.823
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.738
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.819
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.703
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.823
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.767
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.816
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.823
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.811
HNRNPR Sorex araneus ENSSARG00000001732 I 0.811
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.811
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.811
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.776
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.823
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.785
HNRNPR Equus caballus ENSECAG00000013733 I 0.823
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.823
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.828
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.823
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.811
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.823
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.816
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.841
HNRNPR Homo sapiens ENSG00000125944 I 0.823
LOC100070472 Equus caballus ENSECAG00000012464 I 0.746
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.896
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.716
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.896
syncrip Danio rerio ENSDARG00000040184 I 0.886
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.741
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.896
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.891
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.950
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.950
Syncrip Mus musculus ENSMUSG00000032423 I 0.896
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.886
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.896
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.896
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.896
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.896
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.896
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.896
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.900
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.896
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.896
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.891
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.896
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.896
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.896
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.896
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.741
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.941
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.896
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.896
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.891
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.891
SYNCRIP Homo sapiens ENSG00000135316 I 0.896
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.896
syncripl Danio rerio ENSDARG00000026723 I 0.926
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.896
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.896
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.896