SYNCRIP (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000014766 T42347_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.901
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.851
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.842
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000037743 RRM 168 238
ENSTRUP00000037743 RRM 249 316
ENSTRUP00000037743 RRM 344 406
ENSTRUP00000037744 RRM 168 238
ENSTRUP00000037744 RRM 249 316
ENSTRUP00000037744 RRM 344 406

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.837
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.901
AAH70529 Xenopus laevis AAH70529 I 0.891
AAI61702 Xenopus laevis AAI61702 I 0.842
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.837
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.901
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.748
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.837
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.837
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.837
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.901
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.847
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.901
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.837
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.837
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.833
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.790
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.837
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.837
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.767
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.830
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.816
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.738
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.709
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.788
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.792
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.825
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.825
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.837
HNRNPR Sorex araneus ENSSARG00000001732 I 0.825
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.825
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.785
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.837
HNRNPR Equus caballus ENSECAG00000013733 I 0.837
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.842
HNRNPR Homo sapiens ENSG00000125944 I 0.837
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.837
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.837
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.800
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.807
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.837
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.709
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.825
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.830
LOC100070472 Equus caballus ENSECAG00000012464 I 0.748
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.906
syncrip Danio rerio ENSDARG00000040184 I 0.911
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.718
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.901
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.743
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.906
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.990
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.906
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.906
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.901
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.901
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.901
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.901
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.901
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.901
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.901
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.901
Syncrip Mus musculus ENSMUSG00000032423 I 0.906
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.901
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.901
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.901
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.896
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.901
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.906
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.931
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.743
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.901
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.901
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.911
SYNCRIP Homo sapiens ENSG00000135316 I 0.901
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.886
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.916
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.896
syncripl Danio rerio ENSDARG00000026723 I 0.891
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.901
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.901
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.901