ISCW010322 (Ixodes scapularis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ISCW010322 T44849_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.760
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.760
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ISCW010322-PA RRM 5 67
ISCW010322-PA RRM 115 180

Links

Other RRM family RBPs
Other Ixodes scapularis RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.713
AAH44085 Xenopus laevis AAH44085 I 0.705
AAH46668 Xenopus laevis AAH46668 I 0.705
AAH71160 Xenopus laevis AAH71160 I 0.721
AGAP004592 Anopheles gambiae AGAP004592 I 0.752
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.744
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.713
B52 Drosophila melanogaster FBgn0004587 D 0.760
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.736
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.767
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.767
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.744
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.713
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.713
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.729
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.713
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.713
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.721
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.713
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.713
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.752
GF17608 Drosophila ananassae FBgn0094626 I 0.760
GH18528 Drosophila grimshawi FBgn0125995 I 0.752
GI22065 Drosophila mojavensis FBgn0144794 I 0.752
GJ24113 Drosophila virilis FBgn0211197 I 0.752
GK13948 Drosophila willistoni FBgn0215954 I 0.760
GL23543 Drosophila persimilis FBgn0161133 I 0.752
ISCW002531 Ixodes scapularis ISCW002531 I 0.752
ISCW010321 Ixodes scapularis ISCW010321 I 0.775
ISCW014220 Ixodes scapularis ISCW014220 I 0.705
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.713
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.752
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.752
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.721
PHUM290500 Pediculus humanus PHUM290500 I 0.729
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.729
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.713
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.713
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.705
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.721
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.713
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.713
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.713
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.713
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.713
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.705
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.713
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.713
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.713
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.713
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.713
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.713
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.721
Srsf4 Mus musculus ENSMUSG00000028911 I 0.713
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.713
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.705
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.713
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.713
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.713
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.721
SRSF4 Homo sapiens ENSG00000116350 I 0.713
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.713
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.736
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.705
srsf5a Danio rerio ENSDARG00000029818 I 0.705
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.705
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.705
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.713
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.705
SRSF6 Homo sapiens ENSG00000124193 I 0.713
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.705
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.713
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.705
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.705
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.713
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.705
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.705
Srsf6 Mus musculus ENSMUSG00000016921 I 0.713
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.713
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.713
srsf6a Danio rerio ENSDARG00000013729 I 0.705
srsf6b Danio rerio ENSDARG00000016783 I 0.705
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.721
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.705
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.736
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.705