CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ISCW010322
(
Ixodes scapularis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ISCW010322
T44849_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.760
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.760
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ISCW010322-PA
RRM
5
67
VFIGHLSCQVREKDLDKFFKGYGRVGDIHLKNGFGFVEFDDHRDADDAISDLNGKELLGERVS
ISCW010322-PA
RRM
115
180
LIVENLSSHVSWQDLKDYMRQAGEVTYADAHKIRPNEGVVEFANYSDMKNAISKLDNTDLSGRRIR
Links
Other
RRM
family RBPs
Other
Ixodes scapularis
RBPs
86 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRSF1
Meleagris gallopavo
ENSMGAG00000009940
N
0.000
GRSF1
Taeniopygia guttata
ENSTGUG00000001644
N
0.000