PACS2 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000010740 T42307_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.721
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000027095 RRM 6 68
ENSTRUP00000027095 RRM 123 188
ENSTRUP00000027096 RRM 6 68
ENSTRUP00000027096 RRM 123 188

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.953
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.938
srsf5a Danio rerio ENSDARG00000029818 I 0.907
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.884
AAH71160 Xenopus laevis AAH71160 I 0.876
AAH44085 Xenopus laevis AAH44085 I 0.868
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.860
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.860
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.845
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.845
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.798
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.798
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.798
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.798
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.791
SRSF5 Felis catus ENSFCAG00000008848 I 0.791
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.791
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.791
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.791
LOC100053264 Equus caballus ENSECAG00000026873 I 0.791
SRSF5 Homo sapiens ENSG00000100650 D 0.791
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.791
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.791
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.791
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.791
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.791
Srsf5 Mus musculus ENSMUSG00000021134 I 0.791
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.791
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.791
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.791
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.791
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.791
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.791
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.791
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.791
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.791
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.783
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.783
srsf5b Danio rerio ENSDARG00000027734 I 0.783
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.783
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.783
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.783
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.783
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.767
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.760
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.752
SRSF4 Homo sapiens ENSG00000116350 I 0.752
Srsf4 Mus musculus ENSMUSG00000028911 I 0.752
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.752
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.752
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.752
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.752
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.752
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.752
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.752
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.752
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.752
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.752
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.752
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.752
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.752
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.752
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.752
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.752
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.752
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.752
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.752
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.744
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.744
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.736
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.729
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.729
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.729
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.729
ISCW010322 Ixodes scapularis ISCW010322 I 0.721
ISCW014220 Ixodes scapularis ISCW014220 I 0.721
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.721
GK13948 Drosophila willistoni FBgn0215954 I 0.721
GH18528 Drosophila grimshawi FBgn0125995 I 0.721
GL23543 Drosophila persimilis FBgn0161133 I 0.721
GJ24113 Drosophila virilis FBgn0211197 I 0.721
GI22065 Drosophila mojavensis FBgn0144794 I 0.721
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.721
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.721
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.721
GF17608 Drosophila ananassae FBgn0094626 I 0.721
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.721
B52 Drosophila melanogaster FBgn0004587 D 0.721
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.713
Ppa-rsp-1 Pristionchus pacificus PPA18140 N 0.713
PHUM290500 Pediculus humanus PHUM290500 I 0.713
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.713
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.705
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.705
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.705
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.705
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.705
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.705
AGAP004592 Anopheles gambiae AGAP004592 I 0.705
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.705
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.705
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.705
SRSF5 Sorex araneus ENSSARG00000001059 I 0.705