CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PACS2
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000010740
T42307_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.721
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.721
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000027095
RRM
6
68
VFIGHLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKELCSERVT
ENSTRUP00000027095
RRM
123
188
LIVENLSSRISWQDLKDMMRKAGEVTFVDAHRPNKNEGVVEFASRSDMKSAISKFDGTELNGRKLK
ENSTRUP00000027096
RRM
6
68
VFIGHLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKELCSERVT
ENSTRUP00000027096
RRM
123
188
LIVENLSSRISWQDLKDMMRKAGEVTFVDAHRPNKNEGVVEFASRSDMKSAISKFDGTELNGRKLK
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
106 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSGACG00000011761
Gasterosteus aculeatus
ENSGACG00000011761
I
0.953
SRSF5
Oryzias latipes
ENSORLG00000009268
I
0.938
srsf5a
Danio rerio
ENSDARG00000029818
I
0.907
ENSACAG00000005544
Anolis carolinensis
ENSACAG00000005544
I
0.884
AAH71160
Xenopus laevis
AAH71160
I
0.876
AAH44085
Xenopus laevis
AAH44085
I
0.868
XB-GENE-5954653
Xenopus tropicalis
ENSXETG00000017937
I
0.860
XP_002200515.1
Taeniopygia guttata
ENSTGUG00000011492
I
0.860
ENSMGAG00000011888
Meleagris gallopavo
ENSMGAG00000011888
I
0.845
Q5ZKT4_CHICK
Gallus gallus
ENSGALG00000009484
I
0.845
srsf5
Xenopus tropicalis
ENSXETG00000002211
I
0.798
SFRS5
Taeniopygia guttata
ENSTGUG00000011425
I
0.798
SRSF5
Monodelphis domestica
ENSMODG00000011362
I
0.798
SRSF5
Anolis carolinensis
ENSACAG00000005143
I
0.798
SRSF5
Macaca mulatta
ENSMMUG00000022407
I
0.791
SRSF5
Felis catus
ENSFCAG00000008848
I
0.791
SRSF5
Myotis lucifugus
ENSMLUG00000011939
I
0.791
SRSF5
Gorilla gorilla
ENSGGOG00000016462
I
0.791
SRSF5
Tarsius syrichta
ENSTSYG00000007786
I
0.791
LOC100053264
Equus caballus
ENSECAG00000026873
I
0.791
SRSF5
Homo sapiens
ENSG00000100650
D
0.791
SRSF5
Cavia porcellus
ENSCPOG00000005949
I
0.791
A6MLI3_CALJA
Callithrix jacchus
ENSCJAG00000014884
I
0.791
SRSF5
Canis familiaris
ENSCAFG00000016589
I
0.791
Ame_R004936
Ailuropoda melanoleuca
Ame_R004936
I
0.791
A6H7B7_BOVIN
Bos taurus
ENSBTAG00000011596
I
0.791
Srsf5
Mus musculus
ENSMUSG00000021134
I
0.791
Sfrs5
Rattus norvegicus
ENSRNOG00000005513
I
0.791
ENSPPYG00000005945
Pongo pygmaeus
ENSPPYG00000005945
I
0.791
SRSF5
Sus scrofa
ENSSSCG00000002312
I
0.791
SRSF5
Vicugna pacos
ENSVPAG00000006448
I
0.791
SRSF5
Tursiops truncatus
ENSTTRG00000003318
I
0.791
SRSF5
Ochotona princeps
ENSOPRG00000008286
I
0.791
SRSF5
Pan troglodytes
ENSPTRG00000006488
I
0.791
SRSF5
Otolemur garnettii
ENSOGAG00000015122
I
0.791
SRSF5
Oryctolagus cuniculus
ENSOCUG00000009274
I
0.791
estExt_fgenesh2_pm.C_690014
Branchiostoma floridae
estExt_fgenesh2_pm.C_690014
I
0.783
Q5ZLF9_CHICK
Gallus gallus
ENSGALG00000009421
I
0.783
srsf5b
Danio rerio
ENSDARG00000027734
I
0.783
SRSF5
Loxodonta africana
ENSLAFG00000005260
I
0.783
SRSF5
Takifugu rubripes
ENSTRUG00000017811
I
0.783
SRSF5
Echinops telfairi
ENSETEG00000020396
I
0.783
SRSF5
Tetraodon nigroviridis
ENSTNIG00000016411
I
0.783
SRSF5
Ornithorhynchus anatinus
ENSOANG00000013336
I
0.767
SRSF5
Tupaia belangeri
ENSTBEG00000001972
I
0.760
SRSF4
Oryctolagus cuniculus
ENSOCUG00000001837
I
0.752
SRSF4
Homo sapiens
ENSG00000116350
I
0.752
Srsf4
Mus musculus
ENSMUSG00000028911
I
0.752
Sfrs4
Rattus norvegicus
ENSRNOG00000010007
I
0.752
ENSPPYG00000001629
Pongo pygmaeus
ENSPPYG00000001629
I
0.752
SRSF4
Procavia capensis
ENSPCAG00000009879
I
0.752
SRSF4
Macaca mulatta
ENSMMUG00000007110
I
0.752
SRSF4
Pan troglodytes
ENSPTRG00000000445
I
0.752
SRSF4
Meleagris gallopavo
ENSMGAG00000002400
I
0.752
SRSF4
Monodelphis domestica
ENSMODG00000011052
I
0.752
SRSF4
Loxodonta africana
ENSLAFG00000002575
I
0.752
SRSF4
Sus scrofa
ENSSSCG00000003588
I
0.752
Srsf4
Dipodomys ordii
ENSDORG00000002459
I
0.752
A7MB38_BOVIN
Bos taurus
ENSBTAG00000013309
I
0.752
XP_001180940.1
Strongylocentrotus purpuratus
XP_001180940.1
I
0.752
Ame_R018370
Ailuropoda melanoleuca
Ame_R018370
I
0.752
SRSF4
Erinaceus europaeus
ENSEEUG00000008479
I
0.752
LOC100402973
Callithrix jacchus
ENSCJAG00000009971
I
0.752
XP_798746.1
Strongylocentrotus purpuratus
XP_798746.1
I
0.752
SRSF4
Tursiops truncatus
ENSTTRG00000002572
I
0.752
SRSF4
Dasypus novemcinctus
ENSDNOG00000000968
I
0.752
SRSF4
Cavia porcellus
ENSCPOG00000007263
I
0.752
SRSF4
Tarsius syrichta
ENSTSYG00000007903
I
0.744
SRSF4
Ochotona princeps
ENSOPRG00000010098
I
0.744
estExt_fgenesh2_pg.C_920027
Branchiostoma floridae
estExt_fgenesh2_pg.C_920027
I
0.736
estExt_Genewise1Plus.C_sca_890186
Lottia gigantea
estExt_Genewise1Plus.C_sca_890186
I
0.729
e_gw1.89.27.1
Lottia gigantea
e_gw1.89.27.1
I
0.729
SRSF4
Takifugu rubripes
ENSTRUG00000011891
I
0.729
BGIBMGA010178
Bombyx mori
BGIBMGA010178
I
0.729
SRSF4
Tetraodon nigroviridis
ENSTNIG00000005573
I
0.729
SRSF4
Tetraodon nigroviridis
ENSTNIG00000000115
I
0.729
ISCW010322
Ixodes scapularis
ISCW010322
I
0.721
ISCW014220
Ixodes scapularis
ISCW014220
I
0.721
SRSF4
Oryzias latipes
ENSORLG00000009430
I
0.721
GK13948
Drosophila willistoni
FBgn0215954
I
0.721
GH18528
Drosophila grimshawi
FBgn0125995
I
0.721
GL23543
Drosophila persimilis
FBgn0161133
I
0.721
GJ24113
Drosophila virilis
FBgn0211197
I
0.721
GI22065
Drosophila mojavensis
FBgn0144794
I
0.721
CpipJ_CPIJ008634
Culex pipiens
CpipJ_CPIJ008634
I
0.721
GA10599-RA
Drosophila pseudoobscura
FBgn0070656
I
0.721
SRSF4
Gasterosteus aculeatus
ENSGACG00000002389
I
0.721
GF17608
Drosophila ananassae
FBgn0094626
I
0.721
CPIJ008634
Culex quinquefasciatus
CPIJ008634
I
0.721
B52
Drosophila melanogaster
FBgn0004587
D
0.721
SRSF4
Myotis lucifugus
ENSMLUG00000014770
I
0.713
Ppa-rsp-1
Pristionchus pacificus
PPA18140
N
0.713
PHUM290500
Pediculus humanus
PHUM290500
I
0.713
SRSF5
Microcebus murinus
ENSMICG00000009661
I
0.713
SFRS6
Taeniopygia guttata
ENSTGUG00000003455
I
0.705
estExt_Genewise1Plus.C_150169
Daphnia pulex
estExt_Genewise1Plus.C_150169
I
0.705
ENSCING00000004873
Ciona intestinalis
ENSCING00000004873
I
0.705
ENSCING00000012370
Ciona intestinalis
ENSCING00000012370
I
0.705
SRSF6
Gasterosteus aculeatus
ENSGACG00000006084
I
0.705
SFRS6_BOVIN
Bos taurus
ENSBTAG00000008527
I
0.705
AGAP004592
Anopheles gambiae
AGAP004592
I
0.705
SRSF6
Pteropus vampyrus
ENSPVAG00000015232
I
0.705
nasonia_NCBI_hmm368623
Nasonia vitripennis
nasonia_NCBI_hmm368623
I
0.705
nasonia_NCBI_hmm370623
Nasonia vitripennis
nasonia_NCBI_hmm370623
I
0.705
SRSF5
Sorex araneus
ENSSARG00000001059
I
0.705