LOC_Os06g35030 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os06g35030 T45063_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os06g35030.1 RRM 179 246
LOC_Os06g35030.3 RRM 179 246
LOC_Os06g35030.3 RRM 276 344

Links

Other RRM family RBPs
Other Oryza sativa RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29485.m000140 Ricinus communis 29485.m000140 N 0.759
29650.m000268 Ricinus communis 29650.m000268 N 0.752
30068.m002593 Ricinus communis 30068.m002593 N 0.766
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.708
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.854
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.978
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.745
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.905
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.745
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.832
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.737
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.766
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.752
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.752
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.752
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.752
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.752
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.752
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.752
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.752
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.759
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.723
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.730
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.737
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.737
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.737
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.745
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.745
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.730
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.730
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.737
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.745
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.752
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.759
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.810
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.730
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.745
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.723
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.876
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.745
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.766
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.752
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.759
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.715
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.715
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.766
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.854
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.745
MDP0000233630 Malus x domestica MDP0000233630 N 0.745
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.737
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.730
mgf012896m Mimulus guttatus mgf012896m N 0.730
mgf013366m Mimulus guttatus mgf013366m N 0.723
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.759
PK04894.1 Cannabis sativa PK04894.1 N 0.745
PK12463.1 Cannabis sativa PK12463.1 N 0.752
PK28889.1 Cannabis sativa PK28889.1 N 0.788
ppa006808m Prunus persica ppa006808m N 0.730
ppa009298m Prunus persica ppa009298m N 0.781
SB03G002180 Sorghum bicolor Sb03g002180 N 0.730
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.839
SB07G001560 Sorghum bicolor Sb07g001560 N 0.745
SB10G021290 Sorghum bicolor Sb10g021290 N 0.891
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.715
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.723
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.745
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.730
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.752