Sb04g008740 (Sorghum bicolor)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sb04g008740 T45981_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb04g008740.1 RRM 185 252
Sb04g008740.1 RRM 282 350
Sb04g008740.2 RRM 185 252
Sb04g008740.2 RRM 282 338

Links

Other RRM family RBPs
Other Sorghum bicolor RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.934
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.934
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.905
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.898
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.839
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.825
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.825
SB10G021290 Sorghum bicolor Sb10g021290 N 0.818
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.803
ppa009298m Prunus persica ppa009298m N 0.796
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.796
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.788
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.781
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.781
MDP0000233630 Malus x domestica MDP0000233630 N 0.774
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.774
30068.m002593 Ricinus communis 30068.m002593 N 0.774
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.774
PK04894.1 Cannabis sativa PK04894.1 N 0.774
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.774
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.774
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.766
PK28889.1 Cannabis sativa PK28889.1 N 0.766
PK12463.1 Cannabis sativa PK12463.1 N 0.766
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.766
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.766
29485.m000140 Ricinus communis 29485.m000140 N 0.759
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.759
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.759
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.759
ppa006808m Prunus persica ppa006808m N 0.759
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.759
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.759
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.759
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.759
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.759
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.752
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.752
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.752
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.752
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.752
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.752
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.752
29650.m000268 Ricinus communis 29650.m000268 N 0.752
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.752
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.752
SB07G001560 Sorghum bicolor Sb07g001560 N 0.752
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.752
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.745
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.745
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.745
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.745
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.745
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.745
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.745
mgf012896m Mimulus guttatus mgf012896m N 0.745
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.745
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.745
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.737
SB03G002180 Sorghum bicolor Sb03g002180 N 0.737
mgf013366m Mimulus guttatus mgf013366m N 0.737
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.737
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.737
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.730
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.730
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.723
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.723
MDP0000155814 Malus x domestica MDP0000155814 N 0.721
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.715
mgf014445m Mimulus guttatus mgf014445m N 0.701