XM_002894411.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Al_scaffold_0001_4812 T32584_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0001_4812 RRM 78 145
Al_scaffold_0001_4812 RRM 175 243

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.971
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.825
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.818
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.818
ppa009298m Prunus persica ppa009298m N 0.810
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.803
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.803
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.796
29650.m000268 Ricinus communis 29650.m000268 N 0.796
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.796
ppa006808m Prunus persica ppa006808m N 0.788
PK04894.1 Cannabis sativa PK04894.1 N 0.788
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.788
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.788
PK28889.1 Cannabis sativa PK28889.1 N 0.781
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.781
30068.m002593 Ricinus communis 30068.m002593 N 0.781
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.781
mgf012896m Mimulus guttatus mgf012896m N 0.781
PK12463.1 Cannabis sativa PK12463.1 N 0.781
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.774
mgf013366m Mimulus guttatus mgf013366m N 0.774
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.774
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.774
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.774
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.774
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.774
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.766
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.766
MDP0000233630 Malus x domestica MDP0000233630 N 0.766
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.766
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.759
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.759
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.759
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.759
SB07G001560 Sorghum bicolor Sb07g001560 N 0.759
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.759
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.759
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.759
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.752
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.752
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.752
29485.m000140 Ricinus communis 29485.m000140 N 0.752
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.752
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.752
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.752
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.752
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.752
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.752
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.752
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.752
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.752
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.752
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.745
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.745
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.737
SB10G021290 Sorghum bicolor Sb10g021290 N 0.737
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.737
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.730
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.730
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.723
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.715
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.715
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.715
mgf005336m Mimulus guttatus mgf005336m N 0.708
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.701
SB03G002180 Sorghum bicolor Sb03g002180 N 0.701
mgf014445m Mimulus guttatus mgf014445m N 0.701
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.701
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.701