BGIOSIBCE022210 (Oryza indica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIOSIBCE022210 T33007_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE022210 RRM 182 249
BGIOSIBCE022210 RRM 279 344

Links

Other RRM family RBPs
Other Oryza indica RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.978
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.883
SB10G021290 Sorghum bicolor Sb10g021290 N 0.869
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.854
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.839
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.839
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.825
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.818
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.796
PK28889.1 Cannabis sativa PK28889.1 N 0.774
ppa009298m Prunus persica ppa009298m N 0.766
30068.m002593 Ricinus communis 30068.m002593 N 0.752
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.752
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.752
29485.m000140 Ricinus communis 29485.m000140 N 0.745
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.745
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.745
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.745
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.745
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.737
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.737
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.737
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.737
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.737
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.737
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.737
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.737
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.737
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.737
PK12463.1 Cannabis sativa PK12463.1 N 0.737
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.737
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.737
29650.m000268 Ricinus communis 29650.m000268 N 0.737
PK04894.1 Cannabis sativa PK04894.1 N 0.730
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.730
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.730
MDP0000233630 Malus x domestica MDP0000233630 N 0.730
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.730
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.730
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.730
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.730
SB07G001560 Sorghum bicolor Sb07g001560 N 0.730
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.730
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.730
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.723
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.723
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.723
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.723
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.723
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.723
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.723
ppa006808m Prunus persica ppa006808m N 0.715
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.715
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.715
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.715
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.715
mgf012896m Mimulus guttatus mgf012896m N 0.715
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.715
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.708
mgf013366m Mimulus guttatus mgf013366m N 0.708
SB03G002180 Sorghum bicolor Sb03g002180 N 0.708
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.708
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.708
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.701
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.701
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.701
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.701