SB03G002180 (Sorghum bicolor)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sb03g002180 T45953_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb03g002180.1 RRM 115 182
Sb03g002180.1 RRM 212 280

Links

Other RRM family RBPs
Other Sorghum bicolor RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29485.m000140 Ricinus communis 29485.m000140 N 0.759
29650.m000268 Ricinus communis 29650.m000268 N 0.737
30068.m002593 Ricinus communis 30068.m002593 N 0.759
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.730
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.752
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.708
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.752
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.759
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.934
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.737
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.730
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.752
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.752
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.752
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.752
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.752
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.752
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.752
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.752
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.766
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.752
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.701
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.774
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.701
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.708
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.745
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.752
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.752
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.715
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.715
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.730
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.715
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.774
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.781
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.737
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.993
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.745
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.993
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.730
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.759
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.766
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.737
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.752
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.752
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.752
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.934
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.752
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.730
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.752
MDP0000233630 Malus x domestica MDP0000233630 N 0.737
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.701
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.708
mgf012896m Mimulus guttatus mgf012896m N 0.745
mgf013366m Mimulus guttatus mgf013366m N 0.745
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.803
PK04894.1 Cannabis sativa PK04894.1 N 0.737
PK12463.1 Cannabis sativa PK12463.1 N 0.774
PK28889.1 Cannabis sativa PK28889.1 N 0.781
ppa006808m Prunus persica ppa006808m N 0.737
ppa009298m Prunus persica ppa009298m N 0.781
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.737
SB07G001560 Sorghum bicolor Sb07g001560 N 0.759
SB10G021290 Sorghum bicolor Sb10g021290 N 0.737
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.715
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.701
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.715
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.774
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.701