cassava31733.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava31733.valid.m1 T49303_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava31733.valid.m1 RRM 4 65
cassava31733.valid.m1 RRM 97 160

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29742.m001371 Ricinus communis 29742.m001371 N 0.724
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.849
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.929
B9I911_POPTR Populus trichocarpa POPTR_0014s09730 N 0.717
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.841
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.937
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.810
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.786
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 1.000
cassava31734.valid.m1 Manihot esculenta cassava31734.valid.m1 N 0.746
cassava43624.valid.m1 Manihot esculenta cassava43624.valid.m1 N 0.724
cassava43625.valid.m1 Manihot esculenta cassava43625.valid.m1 N 0.724
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.844
Cucsa.259460 Cucumis sativus Cucsa.259460 N 0.748
estExt_fgenesh1_pg.C_1440043 Physcomitrella patens estExt_fgenesh1_pg.C_1440043 N 0.762
e_gw1.5.1267.1 Selaginella moellendorfii e_gw1.5.1267.1 N 0.754
Glyma03g01920.1 Glycine max Glyma03g01920.1 N 0.736
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.724
Glyma10g38400.1 Glycine max Glyma10g38400.1 N 0.881
Glyma16g02500.1 Glycine max Glyma16g02500.1 N 0.717
Glyma20g29460.1 Glycine max Glyma20g29460.1 N 0.881
GRMZM2G121269 Zea mays GRMZM2G121269 N 0.711
LjT39A22.50.nd Lotus japonicus LjT39A22.50.nd N 0.865
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.810
MDP0000288452 Malus x domestica MDP0000288452 N 0.897
MDP0000583927 Malus x domestica MDP0000583927 N 0.789
Medtr1g129430 Medicago truncatula Medtr1g129430 N 0.857
Medtr8g029490 Medicago truncatula Medtr8g029490 N 0.740
mgf011632m Mimulus guttatus mgf011632m N 0.717
mgf011722m Mimulus guttatus mgf011722m N 0.841
mgf013695m Mimulus guttatus mgf013695m N 0.773
mgf016209m Mimulus guttatus mgf016209m N 0.773
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.849
PK11625.1 Cannabis sativa PK11625.1 N 0.750
PK15848.1 Cannabis sativa PK15848.1 N 0.732
PK24775.1 Cannabis sativa PK24775.1 N 0.897
ppa005993m Prunus persica ppa005993m N 0.905
ppa008562m Prunus persica ppa008562m N 0.781
RS40 Arabidopsis thaliana AT4G25500-TAIR-G N 0.802
RS41 Arabidopsis thaliana AT5G52040-TAIR-G N 0.802
SB04G001910 Sorghum bicolor Sb04g001910 N 0.719
XM_002864102.1 Arabidopsis lyrata fgenesh2_kg.8__1091__AT5G52040.2 N 0.810
XM_002869624.1 Arabidopsis lyrata fgenesh2_kg.7__1711__AT4G25500.1 N 0.817
XM_002878371.1 Arabidopsis lyrata fgenesh2_kg.5__2682__AT3G61860.1 N 0.701
XM_002882032.1 Arabidopsis lyrata fgenesh2_kg.4__2884__AT2G46610.1 N 0.701