Smp_041280 (Schistosoma mansoni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Smp_041280 T58615_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.836
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Smp_041280 RRM 21 89
Smp_041280 RRM 395 465

Links

Other RRM family RBPs
Other Schistosoma mansoni RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62054 Helobdella robusta 62054 I 0.779
90208 Helobdella robusta 90208 I 0.801
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.821
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.836
AAEL014033 Aedes aegypti AAEL014033 I 0.850
AGAP004950 Anopheles gambiae AGAP004950 I 0.843
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.821
bru-3 Drosophila melanogaster FBgn0262350 D 0.836
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.821
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.821
BRUNOL6 Homo sapiens ENSG00000140488 D 0.807
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.707
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.707
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.700
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.771
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.829
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.800
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.780
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.807
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.836
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.800
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.829
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.836
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.807
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.757
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.807
CELF6 Oryzias latipes ENSORLG00000013392 I 0.814
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.814
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.800
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.829
Celf6 Mus musculus ENSMUSG00000032297 I 0.814
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.814
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.843
CJA07020 Caenorhabditis japonica CJA07020 I 0.721
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.786
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.800
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.736
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.836
GD12651 Drosophila simulans FBgn0184378 I 0.836
GE20053 Drosophila yakuba FBgn0237378 I 0.836
GF10965 Drosophila ananassae FBgn0088005 I 0.836
GG13757 Drosophila erecta FBgn0106020 I 0.836
GH14684 Drosophila grimshawi FBgn0122160 I 0.843
GI13095 Drosophila mojavensis FBgn0135852 I 0.843
GJ13842 Drosophila virilis FBgn0201061 I 0.843
GK17101 Drosophila willistoni FBgn0219100 I 0.836
GL21647 Drosophila persimilis FBgn0159240 I 0.814
GM24582 Drosophila sechellia FBgn0179445 I 0.836
HEXA Macaca mulatta ENSMMUG00000010687 I 0.807
LOAG_05508 Loa loa LOAG_05508 I 0.779
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.707
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.807
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.814
PHUM315130 Pediculus humanus PHUM315130 I 0.836
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.707
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.814
Smp_131780 Schistosoma mansoni Smp_131780 I 0.821