CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
XM_002877876.1
(
Arabidopsis lyrata
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
fgenesh1_pm.C_scaffold_5001437
T07373_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_5001437
RRM
13
75
LYVGRLSSRTRARDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRIT
fgenesh1_pm.C_scaffold_5001437
CCHC ZF
99
116
GRCFNCGVDGHWARDCTA
fgenesh1_pm.C_scaffold_5001437
CCHC ZF
121
138
NKCYRCGERGHIERNCKN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Arabidopsis lyrata
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPCAG00000007096
Procavia capensis
ENSPCAG00000007096
N
0.000