CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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29805.m001527
(
Ricinus communis
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
29805.m001527
T07489_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
29805.m001527
RRM
13
75
LYVGHLASRTRSRDLEYLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARYHLDGKDLDGSRII
29805.m001527
CCHC ZF
99
116
GRCFNCGIDGHWARDCKA
29805.m001527
CCHC ZF
121
138
NKCYRCGERGHIERNCKN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Ricinus communis
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RNPC3
Anolis carolinensis
ENSACAG00000002029
N
0.000
RBM40_BOVIN
Bos taurus
ENSBTAG00000019091
N
0.000
LOC100393797
Callithrix jacchus
ENSCJAG00000031625
N
0.000
RNPC3
Canis familiaris
ENSCAFG00000019972
N
0.000
rnpc3
Danio rerio
ENSDARG00000011247
N
0.000
RNPC3
Gallus gallus
ENSGALG00000005162
N
0.000
RNPC3
Gasterosteus aculeatus
ENSGACG00000002048
N
0.000
RNPC3
Homo sapiens
ENSG00000185946
N
0.000
RNPC3
Loxodonta africana
ENSLAFG00000032342
N
0.000
RNPC3
Macaca mulatta
ENSMMUG00000018039
N
0.000
RNPC3
Monodelphis domestica
ENSMODG00000002946
N
0.000
Rnpc3
Mus musculus
ENSMUSG00000027981
N
0.000
RNPC3
Oryctolagus cuniculus
ENSOCUG00000004016
N
0.000
RNPC3
Oryzias latipes
ENSORLG00000005694
N
0.000
Rnpc3
Rattus norvegicus
ENSRNOG00000017310
N
0.000
RNPC3
Sus scrofa
ENSSSCG00000006856
N
0.000
RNPC3
Takifugu rubripes
ENSTRUG00000001130
N
0.000
RNPC3
Tetraodon nigroviridis
ENSTNIG00000018963
N
0.000