CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FXR1
(
Anolis carolinensis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSACAG00000003918
T18405_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
FXR1
M152_0.6
Homo sapiens
AYGACR
RNAcompete
Ray et al.(2013)
RNCMPT00161
0.961
FXR2
M020_0.6
Homo sapiens
DGACRRR
RNAcompete
Ray et al.(2013)
RNCMPT00020
0.798
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000003925
KH
203
262
HEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELEEDTGTFRIYGESAEAVKKARSYL
ENSACAP00000003925
KH
267
334
DFIQVPRSLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNENKLPREDGMVPFVFVGTKESIGNVQVLL
Links
Other
KH
family RBPs
Other
Anolis carolinensis
RBPs
94 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABG_04907
Paracoccidioides brasiliensis
PABG_04907
N
0.000
PABG_07362
Paracoccidioides brasiliensis
PABG_07362
N
0.000
PABG_07621
Paracoccidioides brasiliensis
PABG_07621
N
0.000
PABG_07827
Paracoccidioides brasiliensis
PABG_07827
N
0.000
PITG_07293
Phytophthora infestans
PITG_07293
N
0.000
Genemark.10729_g
Serpula lacrymans
Genemark.10729_g
N
0.000
Genemark.4174_g
Serpula lacrymans
Genemark.4174_g
N
0.000