hdlbp (Danio rerio)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSDARG00000009830 T18611_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000017412 KH 101 146
ENSDARP00000017412 KH 155 215
ENSDARP00000017412 KH 227 287
ENSDARP00000017412 KH 300 360
ENSDARP00000017412 KH 369 427
ENSDARP00000017412 KH 440 500
ENSDARP00000017412 KH 512 573
ENSDARP00000017412 KH 586 646
ENSDARP00000017412 KH 658 719
ENSDARP00000017412 KH 732 793
ENSDARP00000017412 KH 806 866
ENSDARP00000017412 KH 878 966
ENSDARP00000017412 KH 973 1033
ENSDARP00000017412 KH 1053 1114
ENSDARP00000017412 KH 1126 1187
ENSDARP00000055770 KH 101 146
ENSDARP00000055770 KH 155 215
ENSDARP00000055770 KH 227 287
ENSDARP00000055770 KH 300 360
ENSDARP00000055770 KH 369 430
ENSDARP00000055770 KH 443 503
ENSDARP00000055770 KH 516 577
ENSDARP00000055770 KH 590 650
ENSDARP00000055770 KH 662 723
ENSDARP00000055770 KH 736 797
ENSDARP00000055770 KH 810 870
ENSDARP00000055770 KH 882 970
ENSDARP00000055770 KH 977 1037
ENSDARP00000055770 KH 1057 1118
ENSDARP00000055770 KH 1130 1191

Links

Other KH family RBPs
Other Danio rerio RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011476 Ailuropoda melanoleuca Ame_R011476 N 0.809
ENSACAG00000003606 Anolis carolinensis ENSACAG00000003606 N 0.752
HDLBP Callithrix jacchus ENSCJAG00000006152 N 0.804
HDLBP Canis familiaris ENSCAFG00000012913 N 0.810
HDLBP Cavia porcellus ENSCPOG00000006297 N 0.808
LOC100057882 Equus caballus ENSECAG00000012829 N 0.809
HDLBP Felis catus ENSFCAG00000010455 N 0.746
VIGLN_CHICK Gallus gallus ENSGALG00000005823 N 0.831
ENSGACG00000019361 Gasterosteus aculeatus ENSGACG00000019361 N 0.710
HDLBP Gasterosteus aculeatus ENSGACG00000004648 N 0.895
HDLBP Gorilla gorilla ENSGGOG00000004392 N 0.810
HDLBP Homo sapiens ENSG00000115677 N 0.810
HDLBP Loxodonta africana ENSLAFG00000014826 N 0.807
HDLBP Meleagris gallopavo ENSMGAG00000003686 N 0.832
HDLBP Monodelphis domestica ENSMODG00000016033 N 0.825
Hdlbp Mus musculus ENSMUSG00000034088 N 0.813
HDLBP Myotis lucifugus ENSMLUG00000005628 N 0.784
HDLBP Ochotona princeps ENSOPRG00000011965 N 0.807
ENSOANG00000011759 Ornithorhynchus anatinus ENSOANG00000011759 N 0.829
HDLBP Oryctolagus cuniculus ENSOCUG00000012667 N 0.810
HDLBP Oryzias latipes ENSORLG00000002226 N 0.897
ENSORLG00000006581 Oryzias latipes ENSORLG00000006581 N 0.722
HDLBP Pan troglodytes ENSPTRG00000013121 N 0.809
ENSPPYG00000013351 Pongo pygmaeus ENSPPYG00000013351 N 0.802
HDLBP Pteropus vampyrus ENSPVAG00000000555 N 0.797
Hdlbp Rattus norvegicus ENSRNOG00000031479 N 0.811
HDLBP Takifugu rubripes ENSTRUG00000012148 N 0.881
ENSTRUG00000012888 Takifugu rubripes ENSTRUG00000012888 N 0.724
ENSTNIG00000002555 Tetraodon nigroviridis ENSTNIG00000002555 N 0.720
HDLBP Tetraodon nigroviridis ENSTNIG00000004185 N 0.876
AAH44314 Xenopus laevis AAH44314 N 0.785
hdlbp Xenopus tropicalis ENSXETG00000012164 N 0.791