hdlbp (Xenopus tropicalis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSXETG00000012164 T19761_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000026545 KH 100 144
ENSXETP00000026545 KH 153 213
ENSXETP00000026545 KH 225 285
ENSXETP00000026545 KH 298 358
ENSXETP00000026545 KH 367 425
ENSXETP00000026545 KH 438 498
ENSXETP00000026545 KH 510 571
ENSXETP00000026545 KH 584 644
ENSXETP00000026545 KH 656 717
ENSXETP00000026545 KH 730 791
ENSXETP00000026545 KH 803 864
ENSXETP00000026545 KH 876 967
ENSXETP00000026545 KH 974 1034
ENSXETP00000026545 KH 1054 1115
ENSXETP00000026545 KH 1127 1188

Links

Other KH family RBPs
Other Xenopus tropicalis RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH44314 Xenopus laevis AAH44314 N 0.958
HDLBP Meleagris gallopavo ENSMGAG00000003686 N 0.860
VIGLN_CHICK Gallus gallus ENSGALG00000005823 N 0.859
ENSOANG00000011759 Ornithorhynchus anatinus ENSOANG00000011759 N 0.858
HDLBP Canis familiaris ENSCAFG00000012913 N 0.848
Hdlbp Mus musculus ENSMUSG00000034088 N 0.847
HDLBP Gorilla gorilla ENSGGOG00000004392 N 0.846
HDLBP Monodelphis domestica ENSMODG00000016033 N 0.846
HDLBP Homo sapiens ENSG00000115677 N 0.846
Hdlbp Rattus norvegicus ENSRNOG00000031479 N 0.846
LOC100057882 Equus caballus ENSECAG00000012829 N 0.846
HDLBP Cavia porcellus ENSCPOG00000006297 N 0.846
HDLBP Pan troglodytes ENSPTRG00000013121 N 0.845
Ame_R011476 Ailuropoda melanoleuca Ame_R011476 N 0.844
HDLBP Loxodonta africana ENSLAFG00000014826 N 0.841
HDLBP Callithrix jacchus ENSCJAG00000006152 N 0.838
ENSPPYG00000013351 Pongo pygmaeus ENSPPYG00000013351 N 0.838
HDLBP Pteropus vampyrus ENSPVAG00000000555 N 0.836
HDLBP Ochotona princeps ENSOPRG00000011965 N 0.835
HDLBP Oryctolagus cuniculus ENSOCUG00000012667 N 0.835
HDLBP Myotis lucifugus ENSMLUG00000005628 N 0.818
hdlbp Danio rerio ENSDARG00000009830 N 0.791
HDLBP Oryzias latipes ENSORLG00000002226 N 0.784
HDLBP Felis catus ENSFCAG00000010455 N 0.781
HDLBP Takifugu rubripes ENSTRUG00000012148 N 0.779
HDLBP Gasterosteus aculeatus ENSGACG00000004648 N 0.777
HDLBP Tetraodon nigroviridis ENSTNIG00000004185 N 0.772
ENSACAG00000003606 Anolis carolinensis ENSACAG00000003606 N 0.758
ENSORLG00000006581 Oryzias latipes ENSORLG00000006581 N 0.742
ENSTNIG00000002555 Tetraodon nigroviridis ENSTNIG00000002555 N 0.736
ENSTRUG00000012888 Takifugu rubripes ENSTRUG00000012888 N 0.732
ENSGACG00000019361 Gasterosteus aculeatus ENSGACG00000019361 N 0.725
HDLBP Sorex araneus ENSSARG00000012639 N 0.712